109 citations · 359 across the 14 of their papers we have counts for
14 papers
Modeling Tissue Detachment and Rupture Using an Extended Vertex Model with T2-inverse Transitions
Shota Nishimoto, Yuichi Togashi
The vertex model is widely used to describe the mechanics of epithelial tissues, but its conventional formulation assumes that all cells remain tightly packed and always share edge…
Molecular Dynamics Analysis of Biomolecular Systems Including Nucleic Acids
Takeru Kameda, Akinori Awazu, Yuichi Togashi
Along with recent progress in structural biology and genome biology, structural dynamics of molecular systems including nucleic acids has attracted attention in the context of gene…
Modeling of Nano-/Micro-machine Crowds: Interplay between the Internal State and Surroundings
Yuichi Togashi
The activity of biological cells is primarily based on chemical reactions and typically modeled as a reaction-diffusion system. Cells are, however, highly crowded with macromolecul…
Varying the resolution of the Rouse model on temporal and spatial scales: application to multiscale modelling of DNA dynamics
Edward Rolls, Yuichi Togashi, Radek Erban
A multi-resolution bead-spring model for polymer dynamics is developed as a generalization of the Rouse model. A polymer chain is described using beads of variable sizes connected…
Energetics of single active diffusion trajectories
Soya Shinkai, Yuichi Togashi
The fundamental insight into Brownian motion by Einstein is that all substances exhibit continual fluctuations due to thermal agitation balancing with the frictional resistance. Ho…
Nonlinearity of Mechanochemical Motions in Motor Proteins
Yuichi Togashi, Toshio Yanagida, Alexander S. Mikhailov
The assumption of linear response of protein molecules to thermal noise or structural perturbations, such as ligand binding or detachment, is broadly used in the studies of protein…