Implementation strategies in phonopy and phono3py
arXiv:2301.05784 · doi:10.1088/1361-648X/acd831
Abstract
Scientific simulation codes are public property sustained by the community. Modern technology allows anyone to join scientific software projects, from anywhere, remotely via the internet. The phonopy and phono3py codes are widely used open source phonon calculation codes. This review describes a collection of computational methods and techniques as implemented in these codes and shows their implementation strategies as a whole, aiming to be useful for the community. Some of the techniques presented here are not limited to phonon calculations and may therefore be useful in other area of condensed matter physics.
References in corpus (14)
- Distribution of phonon lifetime in Brillouin zone
- Self-consistent phonon calculations of lattice dynamical properties in cubic SrTiO with first-principles anharmonic force constants
- Phonon-phonon interactions in transition metals
- The hiphive package for the extraction of high-order force constants by machine learning
- Anharmonic free energies and phonon dispersions from the stochastic self-consistent harmonic approximation: application to platinum and palladium hydrides
- Generating derivative structures: Algorithm and applications
- First-Principles Theory of Anharmonicity and the Inverse Isotope Effect in Superconducting Palladium-Hydride Compounds
- The Stochastic Self-Consistent Harmonic Approximation: Calculating Vibrational Properties of Materials with Full Quantum and Anharmonic Effects
- Second order structural phase transitions, free energy curvature, and temperature-dependent anharmonic phonons in the self-consistent harmonic approximation: theory and stochastic implementation
- First-Principles Lattice Dynamics Method for Strongly Anharmonic Crystals
- Pressure and stress tensor of complex anharmonic crystals within the stochastic self-consistent harmonic approximation
- Recovering hidden Bloch character: Unfolding Electrons, Phonons, and Slabs
- Efficiency of Generalized Regular k-point Grids
- LO-mode phonon of KCl and NaCl at 300 K by inelastic X ray scattering measurements and first principles calculations
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