Inferring broken detailed balance in the absence of observable currents
arXiv:1809.02084 · doi:10.1038/s41467-019-11051-w
Abstract
Identifying dissipation is essential for understanding the physical mechanisms underlying nonequilibrium processes. {In living systems, for example, the dissipation is directly related to the hydrolysis of fuel molecules such as adenosine triphosphate (ATP)}. Nevertheless, detecting broken time-reversal symmetry, which is the hallmark of dissipative processes, remains a challenge in the absence of observable directed motion, flows, or fluxes. Furthermore, quantifying the entropy production in a complex system requires detailed information about its dynamics and internal degrees of freedom. Here we introduce a novel approach to detect time irreversibility and estimate the entropy production from time-series measurements, even in the absence of observable currents. We apply our technique to two different physical systems, namely, a partially hidden network and a molecular motor. Our method does not require complete information about the system dynamics and thus provides a new tool for studying nonequilibrium phenomena.
arXiv comment14 pages, 6 figures
References in corpus (33)
- Kernel density estimation via diffusion
- Entropy production along a stochastic trajectory and an integral fluctuation theorem
- Verification of the Crooks fluctuation theorem and recovery of RNA folding free energies
- Thermodynamic uncertainty relation for biomolecular processes
- Information heat engine: converting information to energy by feedback control
- Dissipation bounds all steady-state current fluctuations
- Dissipation: The phase-space perspective
- The Fluctuation Theorem as a Gibbs Property
- Ensemble and Trajectory Thermodynamics: A Brief Introduction
- Broken detailed balance and non-equilibrium dynamics in living systems
- Estimating dissipation from single stationary trajectories
- Hydrodynamic flow patterns and synchronization of beating cilia
- Entropy production and the arrow of time
- Quantifying dissipation using fluctuating currents
- Probability currents as principal characteristics in the statistical mechanics of non-equilibrium steady states
- Entropy production and time asymmetry in nonequilibrium fluctuations
- Universal bound on the efficiency of molecular motors
- Entropy production and Kullback-Leibler divergence between stationary trajectories of discrete systems
- Fluctuation Theorem for Partially-masked Nonequilibrium Dynamics
- Effective thermodynamics for a marginal observer
- Hierarchical Bounds on Entropy Production Inferred from Partial Information
- Broken Detailed Balance of Filament Dynamics in Active Networks
- Continuous time random walk for open systems: Fluctuation theorems and counting statistics
- Nonergodic Diffusion of Single Atoms in a Periodic Potential
- Nonequilibrium dissipation in living oocytes
- Experimental verification of a Jarzynski-related information-theoretic equality using a single trapped ion
- An illustrative example of the relationship between dissipation and relative entropy
- Dynamical fluctuations for semi-Markov processes
- Probing active forces via a fluctuation-dissipation relation: Application to living cells
- Minimum energetic cost to maintain a target nonequilibrium state
- Allocating dissipation across a molecular machine cycle to maximize flux
- Relative entropy, interaction energy and the nature of dissipation
- Dissipation, interaction and relative entropy
Cited by in corpus (87)
- Broken detailed balance and entropy production in the human brain
- Inferring entropy production from short experiments
- Estimating entropy production by machine learning of short-time fluctuating currents
- Entropy production estimation with optimal current
- Improved bounds on entropy production in living systems
- Estimating entropy production from waiting time distributions
- Play. Pause. Rewind. Measuring local entropy production and extractable work in active matter
- Emergent memory and kinetic hysteresis in strongly driven networks
- Exact Coarse Graining Preserves Entropy Production out of Equilibrium
- Learning entropy production via neural networks
- How dissipation constrains fluctuations in nonequilibrium liquids: Diffusion, structure and biased interactions
- Estimating time-dependent entropy production from non-equilibrium trajectories
- Thermodynamics of active field theories: Energetic cost of coupling to reservoirs
- Time-resolved statistics of snippets as general framework for model-free entropy estimators
- Distribution of the time of the maximum for stationary processes
- Irreversibility in dynamical phases and transitions
- Milestoning estimators of dissipation in systems observed at a coarse resolution: When ignorance is truly bliss
- Non-equilibrium fluctuations and nonlinear response of an active bath
- Quantitative analysis of non-equilibrium systems from short-time experimental data
- Tightest bound on hidden entropy production from partially observed dynamics
- Inference in non-equilibrium systems from incomplete information: the case of linear systems and its pitfalls
- Energy and information flows in autonomous systems
- Violation of Local Detailed Balance Despite a Clear Time-Scale Separation
- Learning the Non-Equilibrium Dynamics of Brownian Movies
- Estimating Entropy Production Rates with First-Passage Processes
- Emergence of local irreversibility in complex interacting systems
- Thermodynamic cost for precision of general counting observables
- Thermodynamics of active matter: Tracking dissipation across scales
- Operationally Accessible Uncertainty Relations for Thermodynamically Consistent Semi-Markov Processes
- Modelling Active Non-Markovian Oscillations
- Fluctuating Entropy Production on the Coarse-Grained Level: Inference and Localization of Irreversibility
- Broken detailed balance and entropy production in directed networks
- Improved bound on entropy production in a quantum annealer
- General theory for localizing the where and when of entropy production meets single-molecule experiments
- Thermodynamic bounds on time-reversal asymmetry
- Optimal time estimation and the clock uncertainty relation for stochastic processes
- Extreme value statistics of edge currents in Markov jump processes and their use for entropy production estimation
- Effective thermodynamics of two interacting underdamped Brownian particles
- Solution to the Fokker-Planck equation for slowly driven Brownian motion: Emergent geometry and a formula for the corresponding thermodynamic metric
- Perspective: Time irreversibility in systems observed at coarse resolution
- Effective estimation of entropy production with lacking data
- Time-symmetric current and its fluctuation response relation around nonequilibrium stalling stationary state
- Dissipative timescales from coarse-graining irreversibility
- Beat of a current
- Conceptual and practical approaches for investigating irreversible processes
- Second Law of Thermodynamics without Einstein Relation
- Large deviations of the stochastic area for linear diffusions
- An estimator of entropy production for partially accessible Markov networks based on the observation of blurred transitions
- Estimating entropy production in a stochastic system with odd-parity variables
- Variance sum rule: proofs and solvable models
- Entropy estimation for partially accessible Markov networks based on imperfect observations: Role of finite resolution and finite statistics
- Survival and extreme statistics of work, heat, and entropy production in steady-state heat engines
- Conditional fluctuation theorems and entropy production for monitored quantum systems under imperfect detection
- Brownian particles in periodic potentials: coarse-graining versus fine structure
- From predicting to learning dissipation from pair correlations of active liquids
- Stochastic Distinguishability of Markovian Trajectories
- Inferring kinetics and entropy production from observable transitions in partially accessible, periodically driven Markov networks
- Dynamics of Micro and Nanoscale Systems in the Weak-Memory Regime
- Inferring entropy production from time-dependent moments
- Thermodynamic inference in partially accessible Markov networks: A unifying perspective from transition-based waiting time distributions
- Entropy production from waiting-time distributions for overdamped Langevin dynamics
- Evidence and quantification of memory effects in competitive first passage events
- Dissipation at limited resolutions: Power law and detection of hidden dissipative scales
- Nonequilibrium Probability Currents in Optically-Driven Colloidal Suspensions
- Entropy bound for time reversal markers
- Inferring entropy production in many-body systems using nonequilibrium maximum entropy
- Attaining entropy production and dissipation maps from Brownian movies via neural networks
- Inferring nonequilibrium thermodynamics from tilted equilibrium using information-geometric Legendre transform
- Dynamics of micro and nanoscale systems in the weak-memory regime: A mathematical framework beyond the Markov approximation
- Inference of Time-Reversal Asymmetry from Time Series in a Piezoelectric Energy Harvester
- Inverse thermodynamic uncertainty relation and entropy production
- Stochastic Thermodynamics of Non-reciprocally Interacting Particles and Fields
- Uncertainty Relations for Mesoscopic Coherent Light
- From observed transitions to hidden paths in Markov networks
- Force-free kinetic inference of entropy production
- Compensating random transition-detection blackouts in Markov networks
- Extreme-Value Statistics of Stochastic Transport Processes: Applications to Molecular Motors and Sports
- Coarse-graining nonequilibrium diffusions with Markov chains
- Thermodynamic inference in molecular motors: a Martingale approach
- Experimentally accessible measurement of irreversibility in stochastic systems by categorizing single-molecule displacements
- Characteristic oscillations in frequency-resolved heat dissipation of linear time-delayed Langevin systems: Approach from the violation of the fluctuation-response relation
- Purely quantum memory in closed systems observed via imperfect measurements
- A pedestrian's approach to large deviations in semi-Markov processes with an application to entropy production
- Inferring entropy production rate from partially observed Langevin dynamics under coarse-graining
- Universal trade-off between irreversibility and intrinsic timescale in thermal relaxation with applications to thermodynamic inference
- Fluctuation-response relation of time-symmetric quantities around general nonequilibrium stationary state
- Consistent expansion of the Langevin propagator with application to entropy production