A Simple and Accurate Network for Hydrogen and Carbon Chemistry in the ISM
arXiv:1610.09023 · doi:10.3847/1538-4357/aa7561
Abstract
Chemistry plays an important role in the interstellar medium (ISM), regulating heating and cooling of the gas, and determining abundances of molecular species that trace gas properties in observations. Although solving the time-dependent equations is necessary for accurate abundances and temperature in the dynamic ISM, a full chemical network is too computationally expensive to incorporate in numerical simulations. In this paper, we propose a new simplified chemical network for hydrogen and carbon chemistry in the atomic and molecular ISM. We compare results from our chemical network in detail with results from a full photo-dissociation region (PDR) code, and also with the Nelson & Langer (1999) (NL99) network previously adopted in the simulation literature. We show that our chemical network gives similar results to the PDR code in the equilibrium abundances of all species over a wide range of densities, temperature, and metallicities, whereas the NL99 network shows significant disagreement. Applying our network in 1D models, we find that the -dominated regime delimits the coldest gas and that the corresponding temperature tracks the cosmic ray ionization rate in molecular clouds. We provide a simple fit for the locus of dominated regions as a function of gas density and column. We also compare with observations of diffuse and translucent clouds. We find that the , and abundances are consistent with equilibrium predictions for densities , but the predicted equilibrium abundance is higher than observations, signaling the potential importance of non-equilibrium/dynamical effects.
arXiv commentA PDR code written in C++ and python based on this chemical network can be found at https://github.com/munan/pdr
References in corpus (104)
- Star Formation in the Milky Way and Nearby Galaxies
- The CO-to-H2 Conversion Factor
- The Star Formation Efficiency in Nearby Galaxies: Measuring Where Gas Forms Stars Effectively
- The Star Formation Law in Nearby Galaxies on Sub-Kpc Scales
- Control of star formation by supersonic turbulence
- The Neutral Atomic Phases of the ISM in the Galaxy
- The UMIST database for astrochemistry 2012
- A Study of the Gas-Star Formation Relation over Cosmic Time
- PHIBSS: molecular gas content and scaling relations in z~1-3 normal star forming galaxies
- A Unified Representation of Gas-Phase Element Depletions in the Interstellar Medium
- Structure of Stationary Photodissociation Fronts
- The Dark Molecular Gas
- Far Infrared and Submillimeter Emission from Galactic and Extragalactic Photo-Dissociation Regions
- Scattering by Interstellar Dust Grains: Optical and Ultraviolet
- The Millennium Arecibo 21-CM Absorption Line Survey. II. Properties of the Warm and Cold Neutral Media
- A Molecular Star Formation Law in the Atomic Gas Dominated Regime in Nearby Galaxies
- The photodissociation and chemistry of CO isotopologues: applications to interstellar clouds and circumstellar disks
- A model for atomic and molecular interstellar gas: The Meudon PDR code
- The Resolved Properties of Extragalactic Giant Molecular Clouds
- Photoelectric Emission from Interstellar Dust: Grain Charging and Gas Heating
- COLD GASS, an IRAM legacy survey of molecular gas in massive galaxies: I. Relations between H2, HI, stellar content and structural properties
- The Universality of Turbulence in Galactic Molecular Clouds
- The Atomic to Molecular Transition in Galaxies. II: HI and H_2 Column Densities
- Diagnostics of irradiated gas in galaxy nuclei. I: A Far-ultraviolet and X-ray dominated region code
- A Constant Molecular Gas Depletion Time in Nearby Disk Galaxies
- Regulation of Star Formation Rates in Multiphase Galactic Disks: a Thermal/Dynamical Equilibrium Model
- COLD GASS, an IRAM Legacy Survey of Molecular Gas in Massive Galaxies: II. The non-universality of the Molecular Gas Depletion Timescale
- Water, O2 and Ice in Molecular Clouds
- The SILCC (SImulating the LifeCycle of molecular Clouds) project: I. Chemical evolution of the supernova-driven ISM
- A 158 Micron [CII] Line Survey of Galaxies at z ~ 1 to 2: An Indicator of Star Formation in the Early Universe
- Physical Properties and Galactic Distribution of Molecular Clouds identified in the Galactic Ring Survey
- A PDR-Code Comparison Study
- Maximally Star-Forming Galactic Disks I. Starburst Regulation Via Feedback-Driven Turbulence
- A FUSE Survey of Interstellar Molecular Hydrogen in Translucent Clouds
- Simulating the formation of molecular clouds. I. Slow formation by gravitational collapse from static initial conditions
- Ultraviolet Survey of CO and H_2 in Diffuse Molecular Clouds: The Reflection of Two Photochemistry Regimes in Abundance Relationships
- H3+ in Diffuse Interstellar Clouds: a Tracer for the Cosmic-Ray Ionization Rate
- Herschel Survey of Galactic OH+, H2O+, and H3O+: Probing the Molecular Hydrogen Fraction and Cosmic-Ray Ionization Rate
- Uncertainties in H2 and HD Chemistry and Cooling and their Role in Early Structure Formation
- Reaction Networks For Interstellar Chemical Modelling: Improvements and Challenges
- Low CO Luminosities in Dwarf Galaxies
- KROME - a package to embed chemistry in astrophysical simulations
- Interstellar Carbon in Translucent Sightlines
- Dielectronic recombination data for dynamic finite-density plasmas I. Goals and methodology
- The SILCC (SImulating the LifeCycle of molecular Clouds) project - II. Dynamical evolution of the supernova-driven ISM and the launching of outflows
- The molecular gas in Luminous Infrared Galaxies I: CO lines, extreme physical conditions, and their drivers
- Radiation Magnetohydrodynamic Simulations of Protostellar Collapse: Protostellar Core Formation
- Molecular Hydrogen in the FUSE Translucent Lines of Sight: The Full Sample
- Radiative recombination data for modelling dynamic finite-density plasmas
- HI-to-H2 Transitions and H I Column Densities in Galaxy Star-Forming Regions
- Supersonic turbulence in the ISM: stellar extinction determinations as probes of the structure and dynamics of dark clouds
- The CI lines as tracers of molecular gas, and their prospects at high redshifts
- Three Dimensional Hydrodynamic Simulations of Multiphase Galactic Disks with Star Formation Feedback: I. Regulation of Star Formation Rates
- The Chemistry of Interstellar OH+, H2O+, and H3O+: Inferring the Cosmic Ray Ionization Rates from Observations of Molecular Ions
- Star formation at very low metallicity. I: Chemistry and cooling at low densities
- What Phase of the Interstellar Medium Correlates with the Star Formation Rate?
- Modelling CO formation in the turbulent interstellar medium
- Regulation of Star Formation Rates in Multiphase Galactic Disks: Numerical Tests of the Thermal/Dynamical Equilibrium Model
- The thermal state of molecular clouds in the Galactic Center: evidence for non-photon-driven heating
- The chemistry of interstellar molecules containing the halogen elements
- High-dynamic-range extinction mapping of infrared dark clouds: Dependence of density variance with sonic Mach number in molecular clouds
- Direct Measurement of the Ratio of Carbon Monoxide to Molecular Hydrogen in the Diffuse Interstellar Medium
- CO Emission in Low Luminosity, HI Rich Galaxies
- Effective destruction of CO by cosmic rays: implications for tracing H gas in the Universe
- Electron-Ion Recombination on Grains and Polycyclic Aromatic Hydrocarbons
- Star formation in metal-poor gas clouds
- The Different Structures of the Two Classes of Starless Cores
- Desorption of CO and O2 interstellar ice analogs
- Is molecular gas necessary for star formation?
- Molecular depletion times and the CO-to-H2 conversion factor in metal-poor galaxies
- Low-Metallicity Star Formation : Prestellar Collapse and Protostellar Accretion in the Spherical Symmetry
- Cosmic-ray and X-ray Heating of Interstellar Clouds and Protoplanetary Disks
- Is atomic carbon a good tracer of molecular gas in metal-poor galaxies?
- Chemical Rates on Small Grains and PAHs: C^+ Recombination and H_2 Formation
- Density Probability Distribution Functions in Supersonic Hydrodynamic and MHD Turbulence
- Chemical probes of turbulence in the diffuse medium: the TDR model
- DESPOTIC -- A New Software Library to Derive the Energetics and SPectra of Optically Thick Interstellar Clouds
- Non-equilibrium chemistry and cooling in the diffuse interstellar medium - I. Optically thin regime
- Approximations for modelling CO chemistry in GMCs: a comparison of approaches
- Physical conditions in QSO absorbers from fine-structure absorption lines
- The Density Variance Mach Number Relation in the Taurus Molecular Cloud
- Analytic HI-to-H2 Photodissociation Transition Profiles
- The Relationship Between Molecular Gas, HI, and Star Formation in the Low-Mass, Low-Metallicity Magellanic Clouds
- The effects of metallicity, UV radiation and non-equilibrium chemistry in high-resolution simulations of galaxies
- Atomic and Molecular Carbon as a Tracer of Translucent Clouds
- The CO-to-H2 Conversion Factor across the Perseus Molecular Cloud
- The Low CO Content of the Extremely Metal Poor Galaxy I Zw 18
- The chemistry of interstellar argonium and other probes of the molecular fraction in diffuse clouds
- Does the CO-to-H2 conversion factor depend on the star formation rate?
- Diffuse Molecular Cloud Densities from UV Measurements of CO Absorption
- The relation between column densities of interstellar OH and CH molecules
- PDR Model Mapping of Physical Conditions via Spitzer/IRS Spectroscopy of H2: Theoretical Success toward NGC 2023-South
- CII in the Interstellar Medium: Excitation by H2 Revisited
- HI-to-H2 Transition Layers in the Star-Forming Region W43
- HI-to-H2 Transitions in the Perseus Molecular Cloud
- A Herschel/HIFI Legacy Survey of HF and H2O in the Galaxy: Probing Diffuse Molecular Cloud Chemistry
- Extended Carbon Line Emission in the Galaxy: Searching for Dark Molecular Gas along the G328 Sightline
- Reanalysis of Copernicus Measurements on Interstellar Carbon Monoxide
- Merged-beams Reaction Studies of O + H_3^+
- Molecular cloud chemistry and the importance of dielectronic recombination
- Chemical evolution of giant molecular clouds in simulations of galaxies
- Galactic Center Molecular Clouds
- Recommended Thermal Rate Coefficients for the C + H Reaction and Some Astrochemical Implications
- Comprehensive rate coefficients for electron collision induced transitions in hydrogen
Cited by in corpus (78)
- Three-phase Interstellar medium in Galaxies Resolving Evolution with Star formation and Supernova feedback (TIGRESS): Algorithms, Fiducial model, and Convergence
- The Dust-to-Gas and Dust-to-Metals Ratio in Galaxies from z=0-6
- Photodissociation and X-Ray Dominated Regions
- FIRE-3: Updated Stellar Evolution Models, Yields, & Microphysics and Fitting Functions for Applications in Galaxy Simulations
- Star Formation Efficiency and Dispersal of Giant Molecular Clouds with UV Radiation Feedback: Dependence on Gravitational Boundedness and Magnetic Fields
- Pressure-Regulated, Feedback-Modulated Star Formation In Disk Galaxies
- Tracing the formation of molecular clouds via [CII], [CI] and CO emission
- Cosmic ray transport in starburst galaxies
- The environmental dependence of the X_CO conversion factor
- Physical Processes in Star Formation
- Hydrodynamic Photoevaporation of Protoplanetary Disks with Consistent Thermochemistry
- The X_CO conversion factor from galactic multiphase ISM simulations
- Metallicity dependence of the H/H and C/C/CO distributions in a resolved self-regulating interstellar medium
- Cold gas in the Milky Way's nuclear wind
- Star cluster formation and cloud dispersal by radiative feedback: dependence on metallicity and compactness
- Introducing TIGRESS-NCR: I. Co-Regulation of the Multiphase Interstellar Medium and Star Formation Rates
- Photochemistry and Heating/Cooling of the Multiphase Interstellar Medium with UV Radiative Transfer for Magnetohydrodynamic Simulations
- The role of galactic dynamics in shaping the physical properties of giant molecular clouds in Milky Way-like galaxies
- A fundamental test for stellar feedback recipes in galaxy simulations
- Metastable Helium Absorptions with 3D Hydrodynamics and Self-Consistent Photochemistry I: WASP-69b, Dimensionality, XUV Flux Level, Spectral Types, and Flares
- Momentum feedback from marginally-resolved HII regions in isolated disc galaxies
- The evolution of grain mantles and silicate dust growth at high redshift
- 3D chemical structure of diffuse turbulent ISM. I. Statistics of the HI-to-H transition
- Synthetic observations of star formation and the interstellar medium
- Dirt-cheap Gas Scaling Relations: Using Dust Absorption, Metallicity and Galaxy Size to Predict Gas Masses for Large Samples of Galaxies
- Reducing the complexity of chemical networks via interpretable autoencoders
- RIGEL: Simulating dwarf galaxies at solar mass resolution with radiative transfer and feedback from individual massive stars
- A simple model for molecular hydrogen chemistry coupled to radiation hydrodynamics
- Starburst Energy Feedback Seen Through HCO/HOC Emission in NGC 253 from ALCHEMI
- CO emission as an effective measure of gas masses of protoplanetary disks
- On the resolution requirements for modelling molecular gas formation in solar neighbourhood conditions
- Non-Equilibrium Chemistry and Destruction of CO by X-ray Flares
- Understanding the evolution and dust formation of carbon stars in the LMC with a look at the JWST
- PDFchem: A new fast method to determine ISM properties and infer environmental parameters using probability distributions
- A scaling relation for the molecular cloud lifetime in Milky Way-like galaxies
- Star Formation in Nuclear Rings with the TIGRESS Framework
- The Life Cycle of the Central Molecular Zone. II: Distribution of atomic and molecular gas tracers
- Dark Molecular Gas in Simulations of z~0 Disc Galaxies
- Constraints on Dark Matter-Electron Scattering from Molecular Cloud Ionization
- The role of neutral hydrogen in setting the abundances of molecular species in the Milky Way's diffuse interstellar medium. I. Observational constraints from ALMA and NOEMA
- Chemical footprints of giant planet formation. Role of planet accretion in shaping the C/O ratio of protoplanetary disks
- The KOSMA- PDR Model -- I. Recent updates to the numerical model of photo-dissociated regions
- Mapping low frequency carbon radio recombination lines towards Cassiopeia A at 340, 148, 54 and 43 MHz
- The Astrochemical Impact of Cosmic Rays in Protoclusters II: CI-to-H and CO-to-H Conversion Factors
- Denoising Diffusion Probabilistic Models to Predict the Density of Molecular Clouds
- Far and extreme UV radiation feedback in molecular clouds and its influence on the mass and size of star clusters
- Effects of Magnetic Fields on Gas Dynamics and Star Formation in Nuclear Rings
- Magnetic fields do not suppress global star formation in low metallicity dwarf galaxies
- Building the molecular cloud population: the role of cloud mergers
- The evolution of HCO in molecular clouds using a novel chemical post-processing algorithm
- The Column Densities of Molecular Gas across Cosmic Time: Bridging Observations and Simulations
- Is the molecular KS relationship universal down to low metallicities?
- The sub-critical illusion: synthetic Zeeman effect observations from galactic zoom-in simulations
- Non-Equilibrium Abundances Treated Holistically (NEATH): the molecular composition of star-forming clouds
- Towards the impact of GMC collisions on the star formation rate
- Gas, dust, and the CO-to-molecular gas conversion factor in low-metallicity starbursts
- HYACINTH: HYdrogen And Carbon chemistry in the INTerstellar medium in Hydro simulations
- Universal Properties of Dense Clumps in Magnetized Molecular Clouds Formed through Shock Compression of Two-phase Atomic Gases
- CO enhancement by magnetohydrodynamic waves; Striations in the Polaris Flare
- : Modeling a Universe of Molecular Line Luminosities in Hydrodynamical Simulations
- Mapping Synthetic Observations to Prestellar Core Models: An Interpretable Machine Learning Approach
- Filament Formation via Collision-induced Magnetic Reconnection -- Formation of a Star Cluster
- The Correlation Between Dust and Gas Contents in Molecular Clouds
- Tree-based solvers for adaptive mesh refinement code FLASH -- IV: An X-ray radiation scheme to couple discrete and diffuse X-ray emission sources to the thermochemistry of the interstellar medium
- A multi-ion non-equilibrium solver for ionised astrophysical plasmas with arbitrary elemental abundances
- A Search for 3-mm Molecular Absorption Line Transitions in the Magellanic Stream
- High [OI] emission lines: ColdSIM simulations and ALMA observations
- The fragmentation of molecular clouds in starburst environments
- Resolving the formation of cold HI filaments in the high velocity cloud complex C
- Thermal damping of Weak Magnetosonic Turbulence in the Interstellar Medium
- Ultraviolet HST Spectroscopy of Planck Cold Clumps
- Extended atomic carbon around molecular clouds
- Predicting the resolved CO emission of star-forming galaxies
- The impact of attenuation on cosmic-ray chemistry: I. Abundances and chemical calibrators in molecular clouds
- On the scale-height of the molecular gas disc in Milky Way-like galaxies
- The role of neutral hydrogen in setting the abundances of molecular species in the Milky Way's diffuse interstellar medium. II. Comparison between observations and theoretical models
- Modelling the non-equilibrium chemistry of the Milky Way's cold nuclear wind
- Observed cosmic evolution of galaxy dust properties with metallicity and tensions with models