output
20022024
most citedIdentification of direct residue contacts in protein-protein interaction by message passing

1.1k citations

Showing 2015Show all

9 papers · 1 filter

physics.comp-ph20152 cited

Kinetic distance and kinetic maps from molecular dynamics simulation

Frank Noe, Cecilia Clementi

Characterizing macromolecular kinetics from molecular dynamics (MD) simulations requires a distance metric that can distinguish slowly-interconverting states. Here we build upon di…

physics.bio-ph2015

Theoretical analysis of degradation mechanisms in the formation of morphogen gradients

Behnaz Bozorgui, Hamid Teimouri, Anatoly B. Kolomeisky

The fundamental biological processes of development of tissues and organs in multicellular organisms is governed by various signaling molecules, which are called morphogens. It is…

hep-th201512 cited

Probing the Hydrodynamic Limit of (Super)gravity

Adriana Di Dato, Jakob Gath, Andreas Vigand Pedersen

We study the long-wavelength effective description of two general classes of charged dilatonic (asymptotically flat) black p-branes including D/NS/M-branes in ten and eleven dimens…

physics.bio-ph201544 cited

Correlations and Symmetry of Interactions Influence Collective Dynamics of Molecular Motors

Daniel Celis-Garza, Hamid Teimouri, Anatoly B. Kolomeisky

Enzymatic molecules that actively support many cellular processes, including transport, cell division and cell motility, are known as motor proteins or molecular motors. Experiment…

nucl-th20151 cited

Recent Advances in the Application of the Shell Model Monte Carlo Approach to Nuclei

Y. Alhassid, M. Bonett-Matiz, A. Mukherjee +2

The shell model Monte Carlo (SMMC) method is a powerful technique for calculating the statistical and collective properties of nuclei in the presence of correlations in model space…

nucl-th2015

Collective enhancement of nuclear state densities by the shell model Monte Carlo approach

C. Özen, Y. Alhassid, H. Nakada

The shell model Monte Carlo (SMMC) approach allows for the microscopic calculation of statistical and collective properties of heavy nuclei using the framework of the configuration…