304 citations · 2.6k across the 75 of their papers we have counts for
77 papers
Thermodynamic inference from noisy single-molecule time series
Todd R. Gingrich, Oleg A. Igoshin, Anatoly B. Kolomeisky +1
Single-molecule or single-particle tracking measurements inherently yield noisy microscopic trajectories, often significantly constrained by the diffraction limit and by the finite…
Stress relaxation in fiber networks via force-dependent stochastic severing
Prathamesh Kulkarni, Anatoly B. Kolomeisky, Fred C. MacKintosh
Fiber networks contribute to the mechanical stability of various biological systems, from cells to tissues. Such systems have been modeled by networks of springs or fibers that exh…
Consistent time reversal and reliable and accurate inference in the presence of memory
Tassilo Schwarz, Anatoly B. Kolomeisky, Aljaž Godec
Thermodynamic inference from coarse observations remains a key challenge. Memory, in particular correlations between consecutively observed mesostates, blur signatures of irreversi…
Surface-Facilitated Trapping by Active Sites: From Catalysts to Viruses
Mikita M. Misiura, Alexander M. Berezhkovskii, Sergey M. Bezrukov +1
Trapping by active sites on surfaces plays important roles in various chemical and biological processes, including catalysis, enzymatic reactions, and viral entry into host cells.…
The energy cost and optimal design of networks for biological discrimination
Qiwei Yu, Anatoly B. Kolomeisky, Oleg A. Igoshin
Many biological processes discriminate between correct and incorrect substrates through the kinetic proofreading mechanism which enables lower error at the cost of higher energy di…
Crowding breaks the forward/backward symmetry of transition times in biased random walks
Jaeoh Shin, Alexander M. Berezhkovskii, Anatoly B. Kolomeisky
Microscopic mechanisms of natural processes are frequently understood in terms of random walk models by analyzing local particle transitions. This is because these models properly…