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20122022
most citedFast Reconstruction of Compact Context-Specific Metabolic Network Models

289 citations

Showing 2016Show all

9 papers · 1 filter

cs.CV2016

A Combinatorial Solution to Non-Rigid 3D Shape-to-Image Matching

Florian Bernard, Frank R. Schmidt, Johan Thunberg +1

We propose a combinatorial solution for the problem of non-rigidly matching a 3D shape to 3D image data. To this end, we model the shape as a triangular mesh and allow each triangl…

math.OC2016

Almost global consensus on the n-sphere

Johan Markdahl, Johan Thunberg, Jorge Goncalves

This paper establishes novel results regarding the global convergence properties of a large class of consensus protocols for multi-agent systems that evolve in continuous time on t…

math.NA2016★ 3 cited

Approximate Joint Matrix Triangularization

Nicolo Colombo, Nikos Vlassis

We consider the problem of approximate joint triangularization of a set of noisy jointly diagonalizable real matrices. Approximate joint triangularizers are commonly used in the es…

q-bio.GN2016★ 1 cited

An observation of circular RNAs in bacterial RNA-seq data

Nicolas Innocenti, Hoang-Son Nguyen, Aymeric Fouquier d'hérouël +1

Circular RNAs (circRNAs) are a class of RNA with an important role in micro RNA (miRNA) regulation recently discovered in Human and various other eukaryotes as well as in archaea.…

q-bio.MN2016★ 21 cited

ReconMap: An interactive visualisation of human metabolism

Alberto Noronha, Anna Dröfn Danielsdóttir, Freyr Jóhannsson +8

A genome-scale reconstruction of human metabolism, Recon 2, is available but no interface exists to interactively visualise its content integrated with omics data and simulation re…

eess.SY2016★ 5 cited

Inverse Problems for Matrix Exponential in System Identification: System Aliasing

Zuogon Yue, Johan Thunberg, Jorge Goncalves

This note addresses identification of the -matrix in continuous time linear dynamical systems on state-space form. If this matrix is partially known or known to have a sparse st…

q-bio.MN2016★ 34 cited

Identification of conserved moieties in metabolic networks by graph theoretical analysis of atom transition networks

Hulda S. Haraldsdóttir, Ronan M. T. Fleming

Conserved moieties are groups of atoms that remain intact in all reactions of a metabolic network. Identification of conserved moieties gives insight into the structure and functio…

eess.SY2016★ 4 cited

Linear identification of nonlinear systems: A lifting technique based on the Koopman operator

Alexandre Mauroy, Jorge Goncalves

We exploit the key idea that nonlinear system identification is equivalent to linear identification of the socalled Koopman operator. Instead of considering nonlinear system identi…

cs.CV2016★ 48 cited

Shape-aware Surface Reconstruction from Sparse 3D Point-Clouds

Florian Bernard, Luis Salamanca, Johan Thunberg +7

The reconstruction of an object's shape or surface from a set of 3D points plays an important role in medical image analysis, e.g. in anatomy reconstruction from tomographic measur…