3 papers
cs.SE2017
ARTENOLIS: Automated Reproducibility and Testing Environment for Licensed Software
Laurent Heirendt, Sylvain Arreckx, Christophe Trefois +6
Motivation: Automatically testing changes to code is an essential feature of continuous integration. For open-source code, without licensed dependencies, a variety of continuous in…
q-bio.MN2016
MetaboTools: A comprehensive toolbox for analysis of genome-scale metabolic models
Maike K. Aurich, Ronan M. T. Fleming, Ines Thiele
Metabolomic data sets provide a direct read-out of cellular phenotypes and are increasingly generated to study biological questions. Our previous work revealed the potential of ana…
q-bio.MN2016
ReconMap: An interactive visualisation of human metabolism
Alberto Noronha, Anna Dröfn Danielsdóttir, Freyr Jóhannsson +8
A genome-scale reconstruction of human metabolism, Recon 2, is available but no interface exists to interactively visualise its content integrated with omics data and simulation re…