93 citations · 242 across the 17 of their papers we have counts for
19 papers
kgsteward: a tool for building, reproducing and maintaining distributed knowledge graphs
Marco Pagni, Robin Engler, Frederic Burdet +15
Collaborative research projects in life sciences increasingly need to integrate private, embargoed consortium data with public reference databases in order to reach statistically m…
Variational kinetics: elementary reaction kinetics via conic optimisation
Ronan M. T. Fleming, Ines Thiele
Genome-scale modelling methods primarily predict reaction fluxes, whereas established high throughput experimental technologies primarily measure molecular species concentrations.…
Characterisation of conserved and reacting moieties in chemical reaction networks
Hadjar Rahou, Hulda S. Haraldsdottir, Filippo Martinelli +2
A detailed understanding of biochemical networks at the molecular level is essential for studying complex cellular processes. In this paper, we provide a comprehensive description…
DEMETER: Efficient simultaneous curation of genome-scale reconstructions guided by experimental data and refined gene annotations
Almut Heinken, Stefanía Magnúsdóttir, Ronan M. T. Fleming +1
Motivation: Manual curation of genome-scale reconstructions is laborious, yet existing automated curation tools typically do not take species-specific experimental data and manuall…
Finding Zeros of Hölder Metrically Subregular Mappings via Globally Convergent Levenberg-Marquardt Methods
Masoud Ahookhosh, Ronan M. T. Fleming, Phan T. Vuong
We present two globally convergent Levenberg-Marquardt methods for finding zeros of Hölder metrically subregular mappings that may have non-isolated zeros. The first method unifies…
ARTENOLIS: Automated Reproducibility and Testing Environment for Licensed Software
Laurent Heirendt, Sylvain Arreckx, Christophe Trefois +6
Motivation: Automatically testing changes to code is an essential feature of continuous integration. For open-source code, without licensed dependencies, a variety of continuous in…