289 citations
Counting papers with at most 25 authors, so collaboration author lists do not stand in for the people here.
- University of LuxembourgLU34 papers
- University of CambridgeGB5 papers
- Centre Hospitalier de LuxembourgLU3 papers
- Institute for Systems BiologyUS3 papers
- Aalto UniversityFI2 papers
- Adobe Systems (United States)US2 papers
- KTH Royal Institute of TechnologySE2 papers
- Trier University of Applied SciencesDE2 papers
- University of Newcastle AustraliaAU2 papers
- AlbaNovaSE1 paper
- Cluster of Excellence on Plant SciencesDE1 paper
- Cornell UniversityUS1 paper
7 papers · 1 filter
Network Reconstruction from Intrinsic Noise
David Hayden, Ye Yuan, Jorge Goncalves
This paper considers the problem of inferring an unknown network of dynamical systems driven by unknown, intrinsic, noise inputs. Equivalently we seek to identify direct causal dep…
Mesoscopic behavior from microscopic Markov dynamics and its application to calcium release channels
Nils Christian, Alexander Skupin, Silvia Morante +3
A major challenge in biology is to understand how molecular processes determine phenotypic features. We address this fundamental problem in a class of model systems by developing a…
Douglas-Rachford Feasibility Methods for Matrix Completion Problems
Francisco J. Aragón Artacho, Jonathan M. Borwein, Matthew K. Tam
In this paper we give general recommendations for successful application of the Douglas-Rachford reflection method to convex and non-convex real matrix-completion problems. These g…
Recent Results on Douglas-Rachford Methods for Combinatorial Optimization Problems
Francisco J. Aragón Artacho, Jonathan M. Borwein, Matthew K. Tam
We discuss recent positive experiences applying convex feasibility algorithms of Douglas--Rachford type to highly combinatorial and far from convex problems.
Fast Reconstruction of Compact Context-Specific Metabolic Network Models
Nikos Vlassis, Maria Pires Pacheco, Thomas Sauter
Systemic approaches to the study of a biological cell or tissue rely increasingly on the use of context-specific metabolic network models. The reconstruction of such a model from h…
Genomic Sequence Diversity and Population Structure of Saccharomyces cerevisiae Assessed by RAD-seq
Gareth A. Cromie, Katie E. Hyma, Catherine L. Ludlow +6
The budding yeast Saccharomyces cerevisiae is important for human food production and as a model organism for biological research. The genetic diversity contained in the global pop…
Describing the complexity of systems: multi-variable "set complexity" and the information basis of systems biology
David J. Galas, Nikita A. Sakhanenko, Alexander Skupin +1
Context dependence is central to the description of complexity. Keying on the pairwise definition of "set complexity" we use an information theory approach to formulate general mea…