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20082026
most citedNiftyNet: a deep-learning platform for medical imaging

563 citations

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11 papers · 1 filter

cs.CV2026

Evaluation of Uncertainty-Aware Multi-Software Ensembles for Hippocampal Segmentation

Gabriel Oliveira-Stahl, Anna Schroder, James Moggridge +6

Accurate hippocampal segmentation can be a useful tool for diagnosing and monitoring neurological conditions such as Alzheimer's disease and epilepsy. While numerous automated segm…

cs.CV2022★ 29 cited

Brain tumour segmentation with incomplete imaging data

James K Ruffle, Samia Mohinta, Robert J Gray +2

The complex heterogeneity of brain tumours is increasingly recognized to demand data of magnitudes and richness only fully-inclusive, large-scale collections drawn from routine cli…

cs.CV2021★ 21 cited

Transfer Learning of Deep Spatiotemporal Networks to Model Arbitrarily Long Videos of Seizures

Fernando Pérez-García, Catherine Scott, Rachel Sparks +2

Detailed analysis of seizure semiology, the symptoms and signs which occur during a seizure, is critical for management of epilepsy patients. Inter-rater reliability using qualitat…

cs.CV2021★ 11 cited

Model-based multi-parameter mapping

Yael Balbastre, Mikael Brudfors, Michela Azzarito +3

Quantitative MR imaging is increasingly favoured for its richer information content and standardised measures. However, computing quantitative parameter maps, such as those encodin…

cs.CV2021

Vessel-CAPTCHA: an efficient learning framework for vessel annotation and segmentation

Vien Ngoc Dang, Francesco Galati, Rosa Cortese +7

Deep learning techniques for 3D brain vessel image segmentation have not been as successful as in the segmentation of other organs and tissues. This can be explained by two factors…

cs.CV2020★ 28 cited

Scribble-based Domain Adaptation via Co-segmentation

Reuben Dorent, Samuel Joutard, Jonathan Shapey +7

Although deep convolutional networks have reached state-of-the-art performance in many medical image segmentation tasks, they have typically demonstrated poor generalisation capabi…

cs.CV2018

A Modality-Adaptive Method for Segmenting Brain Tumors and Organs-at-Risk in Radiation Therapy Planning

Mikael Agn, Per Munck af Rosenschöld, Oula Puonti +7

In this paper we present a method for simultaneously segmenting brain tumors and an extensive set of organs-at-risk for radiation therapy planning of glioblastomas. The method comb…

cs.CV2018★ 12 cited

An Algorithm for Learning Shape and Appearance Models without Annotations

John Ashburner, Mikael Brudfors, Kevin Bronik +1

This paper presents a framework for automatically learning shape and appearance models for medical (and certain other) images. It is based on the idea that having a more accurate s…

cs.CV2018★ 9 cited

Towards safe deep learning: accurately quantifying biomarker uncertainty in neural network predictions

Zach Eaton-Rosen, Felix Bragman, Sotirios Bisdas +2

Automated medical image segmentation, specifically using deep learning, has shown outstanding performance in semantic segmentation tasks. However, these methods rarely quantify the…

cs.CV2017★ 563 cited

NiftyNet: a deep-learning platform for medical imaging

Eli Gibson, Wenqi Li, Carole Sudre +14

Medical image analysis and computer-assisted intervention problems are increasingly being addressed with deep-learning-based solutions. Established deep-learning platforms are flex…

cs.CV2017★ 90 cited

Generalised Wasserstein Dice Score for Imbalanced Multi-class Segmentation using Holistic Convolutional Networks

Lucas Fidon, Wenqi Li, Luis C. Garcia-Peraza-Herrera +4

The Dice score is widely used for binary segmentation due to its robustness to class imbalance. Soft generalisations of the Dice score allow it to be used as a loss function for tr…