622 citations · 862 across the 11 of their papers we have counts for
11 papers
RadEdit: stress-testing biomedical vision models via diffusion image editing
Fernando Pérez-García, Sam Bond-Taylor, Pedro P. Sanchez +11
Biomedical imaging datasets are often small and biased, meaning that real-world performance of predictive models can be substantially lower than expected from internal testing. Thi…
MAIRA-1: A specialised large multimodal model for radiology report generation
Stephanie L. Hyland, Shruthi Bannur, Kenza Bouzid +12
We present a radiology-specific multimodal model for the task for generating radiological reports from chest X-rays (CXRs). Our work builds on the idea that large language model(s)…
Exploring the Boundaries of GPT-4 in Radiology
Qianchu Liu, Stephanie Hyland, Shruthi Bannur +16
The recent success of general-domain large language models (LLMs) has significantly changed the natural language processing paradigm towards a unified foundation model across domai…
Region-based Contrastive Pretraining for Medical Image Retrieval with Anatomic Query
Ho Hin Lee, Alberto Santamaria-Pang, Jameson Merkow +4
We introduce a novel Region-based contrastive pretraining for Medical Image Retrieval (RegionMIR) that demonstrates the feasibility of medical image retrieval with similar anatomic…
Compositional Zero-Shot Domain Transfer with Text-to-Text Models
Fangyu Liu, Qianchu Liu, Shruthi Bannur +9
Label scarcity is a bottleneck for improving task performance in specialised domains. We propose a novel compositional transfer learning framework (DoT5 - domain compositional zero…
Learning to Exploit Temporal Structure for Biomedical Vision-Language Processing
Shruthi Bannur, Stephanie Hyland, Qianchu Liu +13
Self-supervised learning in vision-language processing exploits semantic alignment between imaging and text modalities. Prior work in biomedical VLP has mostly relied on the alignm…
MONAI Label: A framework for AI-assisted Interactive Labeling of 3D Medical Images
Andres Diaz-Pinto, Sachidanand Alle, Vishwesh Nath +14
The lack of annotated datasets is a major bottleneck for training new task-specific supervised machine learning models, considering that manual annotation is extremely expensive an…
Transfer Learning of Deep Spatiotemporal Networks to Model Arbitrarily Long Videos of Seizures
Fernando Pérez-García, Catherine Scott, Rachel Sparks +2
Detailed analysis of seizure semiology, the symptoms and signs which occur during a seizure, is critical for management of epilepsy patients. Inter-rater reliability using qualitat…
A self-supervised learning strategy for postoperative brain cavity segmentation simulating resections
Fernando Pérez-García, Reuben Dorent, Michele Rizzi +9
Accurate segmentation of brain resection cavities (RCs) aids in postoperative analysis and determining follow-up treatment. Convolutional neural networks (CNNs) are the state-of-th…
Simulation of Brain Resection for Cavity Segmentation Using Self-Supervised and Semi-Supervised Learning
Fernando Pérez-García, Roman Rodionov, Ali Alim-Marvasti +3
Resective surgery may be curative for drug-resistant focal epilepsy, but only 40% to 70% of patients achieve seizure freedom after surgery. Retrospective quantitative analysis coul…
TorchIO: A Python library for efficient loading, preprocessing, augmentation and patch-based sampling of medical images in deep learning
Fernando Pérez-García, Rachel Sparks, Sébastien Ourselin
Processing of medical images such as MRI or CT presents unique challenges compared to RGB images typically used in computer vision. These include a lack of labels for large dataset…