157 citations
- University of WashingtonUS6 papers
- Harvard UniversityUS5 papers
- Johns Hopkins UniversityUS4 papers
- University of CalgaryCA4 papers
- Eötvös Loránd UniversityHU3 papers
- European Organization for Nuclear ResearchCH3 papers
- Istituto per le Applicazioni del Calcolo Mauro PiconeIT3 papers
- Italian Institute of TechnologyIT3 papers
- Luxembourg Centre for Systems BiomedicineLU3 papers
- Space Telescope Science InstituteUS3 papers
- Tampere UniversityFI3 papers
- University of PennsylvaniaUS3 papers
5 papers · 1 filter
Slim: interoperable slide microscopy viewer and annotation tool for imaging data science and computational pathology
Chris Gorman, Davide Punzo, Igor Octaviano +6
The exchange of large and complex slide microscopy imaging data in biomedical research and pathology practice is impeded by a lack of data standardization and interoperability, whi…
Time Dependent Saddle Node Bifurcation: Breaking Time and the Point of No Return in a Non-Autonomous Model of Critical Transitions
Jeremiah Li, Felix X. -F. Ye, Hong Qian +1
There is a growing awareness that catastrophic phenomena in biology and medicine can be mathematically represented in terms of saddle-node bifurcations. In particular, the term `ti…
Multi-study Integration of Brain Cancer Transcriptomes Reveals Organ-Level Molecular Signatures
Jaeyun Sung, Pan-Jun Kim, Shuyi Ma +6
We utilized abundant transcriptomic data for the primary classes of brain cancers to study the feasibility of separating all of these diseases simultaneously based on molecular dat…
ProbCD: enrichment analysis accounting for categorization uncertainty
Ricardo Vêncio, Ilya Shmulevich
As in many other areas of science, systems biology makes extensive use of statistical association and significance estimates in contingency tables, a type of categorical data analy…
Simcluster: clustering enumeration gene expression data on the simplex space
Ricardo ZN Vêncio, Leonardo Varuzza, Carlos AB Pereira +2
Transcript enumeration methods such as SAGE, MPSS, and sequencing-by-synthesis EST ``digital northern'', are important high-throughput techniques for digital gene expression measur…