94 citations · 252 across the 9 of their papers we have counts for
10 papers
Dynamical systems analysis of stack filters
Matti Nykter, Juha Kesseli, Ilya Shmulevich
We study classes of dynamical systems that can be obtained by constructing recursive networks with monotone Boolean functions. Stack filters in nonlinear signal processing are spec…
Set-based complexity and biological information
David J. Galas, Matti Nykter, Gregory W. Carter +2
It is not obvious what fraction of all the potential information residing in the molecules and structures of living systems is significant or meaningful to the system. Sets of rand…
Critical Networks Exhibit Maximal Information Diversity in Structure-Dynamics Relationships
Matti Nykter, Nathan D. Price, Antti Larjo +4
Network structure strongly constrains the range of dynamic behaviors available to a complex system. These system dynamics can be classified based on their response to perturbations…
Entropy of complex relevant components of Boolean networks
P. Krawitz, I. Shmulevich
Boolean network models of strongly connected modules are capable of capturing the high regulatory complexity of many biological gene regulatory circuits. We study numerically the p…
ProbCD: enrichment analysis accounting for categorization uncertainty
Ricardo Vêncio, Ilya Shmulevich
As in many other areas of science, systems biology makes extensive use of statistical association and significance estimates in contingency tables, a type of categorical data analy…
Simcluster: clustering enumeration gene expression data on the simplex space
Ricardo ZN Vêncio, Leonardo Varuzza, Carlos AB Pereira +2
Transcript enumeration methods such as SAGE, MPSS, and sequencing-by-synthesis EST ``digital northern'', are important high-throughput techniques for digital gene expression measur…