94 citations · 242 across the 6 of their papers we have counts for
6 papers
Relative Stability of Network States in Boolean Network Models of Gene Regulation in Development
Joseph Xu Zhou, Areejit Samal, Aymeric Fouquier d'Hèrouël +2
Progress in cell type reprogramming has revived the interest in Waddington's concept of the epigenetic landscape. Recently researchers developed the quasi-potential theory to repre…
Multi-study Integration of Brain Cancer Transcriptomes Reveals Organ-Level Molecular Signatures
Jaeyun Sung, Pan-Jun Kim, Shuyi Ma +6
We utilized abundant transcriptomic data for the primary classes of brain cancers to study the feasibility of separating all of these diseases simultaneously based on molecular dat…
Genetic Co-Occurrence Network across Sequenced Microbes
Pan-Jun Kim, Nathan D. Price
The phenotype of any organism on earth is, in large part, the consequence of interplay between numerous gene products encoded in the genome, and such interplay between gene product…
Macroscopic Kinetic Effect of Cell-to-Cell Variation in Biochemical Reactions
Pan-Jun Kim, Nathan D. Price
Genetically identical cells under the same environmental conditions can show strong variations in protein copy numbers due to inherently stochastic events in individual cells. We h…
Set-based complexity and biological information
David J. Galas, Matti Nykter, Gregory W. Carter +2
It is not obvious what fraction of all the potential information residing in the molecules and structures of living systems is significant or meaningful to the system. Sets of rand…
Critical Networks Exhibit Maximal Information Diversity in Structure-Dynamics Relationships
Matti Nykter, Nathan D. Price, Antti Larjo +4
Network structure strongly constrains the range of dynamic behaviors available to a complex system. These system dynamics can be classified based on their response to perturbations…