62 citations
- University of TorontoCA3 papers
- Université de MontréalCA2 papers
- Agricultural Research ServiceUS1 paper
- AIDS VancouverCA1 paper
- Barcelona Supercomputing CenterES1 paper
- BC Centre for Disease ControlCA1 paper
- Canadian Cancer SocietyCA1 paper
- Centre Hospitalier de l’Université de MontréalCA1 paper
- Charité - Universitätsmedizin BerlinDE1 paper
- Children's Hospital of Eastern OntarioCA1 paper
- Cornell UniversityUS1 paper
- Djavad Mowafaghian Centre for Brain HealthCA1 paper
7 papers
Transfer Learning and Machine Learning for Training Five Year Survival Prognostic Models in Early Breast Cancer
Lisa Pilgram, Kai Yang, Ana-Alicia Beltran-Bless +22
Prognostic information is essential for decision-making in breast cancer management. Recently trials have predominantly focused on genomic prognostication tools, even though clinic…
Applying the FAIR Principles to computational workflows
Sean R. Wilkinson, Meznah Aloqalaa, Khalid Belhajjame +20
Recent trends within computational and data sciences show an increasing recognition and adoption of computational workflows as tools for productivity and reproducibility that also…
The Canadian VirusSeq Data Portal & Duotang: open resources for SARS-CoV-2 viral sequences and genomic epidemiology
Erin E. Gill, Baofeng Jia, Carmen Lia Murall +67
The COVID-19 pandemic led to a large global effort to sequence SARS-CoV-2 genomes from patient samples to track viral evolution and inform public health response. Millions of SARS-…
Recommendations for extending the GFF3 specification for improved interoperability of genomic data
Surya Saha, Scott Cain, Ethalinda K. S. Cannon +8
The GFF3 format is a common, flexible tab-delimited format representing the structure and function of genes or other mapped features (https://github.com/The-Sequence-Ontology/Speci…
Simulated dose painting of hypoxic sub-volumes in pancreatic cancer stereotactic body radiotherapy
Ahmed M. Elamir, Teodor Stanescu, Andrea Shessel +15
Dose painting of hypoxic tumour sub-volumes using positron-emission tomography (PET) has been shown to improve tumour control in silico in several sites. Pancreatic cancer presents…
Integrating alignment-based and alignment-free sequence similarity measures for biological sequence classification
Ivan Borozan, Stuart Watt, Vincent Ferretti
Alignment-based sequence similarity searches, while accurate for some type of sequences, can produce incorrect results when used on more divergent but functionally related sequence…