output
20122025
most citedComparative Analysis of Tandem Repeats from Hundreds of Species Reveals Unique Insights into Centromere Evolution

596 citations

23 papers

cs.CV2025★ 1 cited

MatchPlant: An Open-Source Pipeline for UAV-Based Single-Plant Detection and Data Extraction

Worasit Sangjan, Piyush Pandey, Norman B. Best +1

Accurate identification of individual plants from unmanned aerial vehicle (UAV) images is essential for advancing high-throughput phenotyping and supporting data-driven decision-ma…

eess.SP2025★ 4 cited

Precision yield estimation and mapping in manual strawberry harvesting with instrumented picking carts and a robust data processing pipeline

Uddhav Bhattarai, Rajkishan Arikapudi, Chen Peng +3

High-resolution yield maps for manually harvested crops are impractical to generate on commercial scales because yield monitors are available only for mechanical harvesters. Howeve…

cs.LG2025★ 2 cited

Data-Driven Worker Activity Recognition and Efficiency Estimation in Manual Fruit Harvesting

Uddhav Bhattarai, Rajkishan Arikapudi, Steven A. Fennimore +2

Manual fruit harvesting is common in agriculture, but the amount of time pickers spend on non-productive activities can make it very inefficient. Accurately identifying picking vs.…

cond-mat.mes-hall2024

Plasmonic Brownian Ratchets for Directed Transport of Analytes

Marciano Palma do Carmo, David Mack, Diane J. Roth +6

Controlled long-range transport of micro- and nano-scale objects is a key requirement in lab-on-a-chip and microfluidic applications, enabling the efficient capture, concentration,…

cs.LG2023★ 4 cited

Unsupervised High Impedance Fault Detection Using Autoencoder and Principal Component Analysis

Yingxiang Liu, Mohammad Razeghi-Jahromi, James Stoupis

Detection of high impedance faults (HIF) has been one of the biggest challenges in the power distribution network. The low current magnitude and diverse characteristics of HIFs mak…

eess.SP2022★ 8 cited

PigV: Monitoring Pig Vital Signs through Ground Vibrations Induced by Heartbeat and Respiration

Yiwen Dong, Jesse R Codling, Gary Rohrer +5

Pig vital sign monitoring (e.g., estimating the heart rate (HR) and respiratory rate (RR)) is essential to understand the stress level of the sow and detect the onset of parturitio…

q-bio.OT2022★ 4 cited

Recommendations for extending the GFF3 specification for improved interoperability of genomic data

Surya Saha, Scott Cain, Ethalinda K. S. Cannon +8

The GFF3 format is a common, flexible tab-delimited format representing the structure and function of genes or other mapped features (https://github.com/The-Sequence-Ontology/Speci…

cs.GR2019★ 11 cited

Modelling curvature of a bent paper leaf

Sasikanth Raghava Goteti

In this article, we briefly describe various tools and approaches that algebraic geometry has to offer to straighten bent objects. Throughout this article we will consider a specif…

cs.RO2019★ 49 cited

The Use of Agricultural Robots in Orchard Management

Qin Zhang, Manoj Karkee, Amy Tabb

Book chapter that summarizes recent research on agricultural robotics in orchard management, including Robotic pruning, Robotic thinning, Robotic spraying, Robotic harvesting, Robo…

cs.RO2019★ 120 cited

Solving the Robot-World Hand-Eye(s) Calibration Problem with Iterative Methods

Amy Tabb, Khalil M. Ahmad Yousef

Robot-world, hand-eye calibration is the problem of determining the transformation between the robot end-effector and a camera, as well as the transformation between the robot base…

cs.RO2019★ 15 cited

Detecting Invasive Insects with Unmanned Aerial Vehicles

Brian Stumph, Miguel Hernandez Virto, Henry Medeiros +4

A key aspect to controlling and reducing the effects invasive insect species have on agriculture is to obtain knowledge about the migration patterns of these species. Current state…

cs.CV2018★ 12 cited

Segmenting root systems in X-ray computed tomography images using level sets

Amy Tabb, Keith E. Duncan, Christopher N. Topp

The segmentation of plant roots from soil and other growing media in X-ray computed tomography images is needed to effectively study the root system architecture without excavation…

cs.RO2017★ 34 cited

A robotic vision system to measure tree traits

Amy Tabb, Henry Medeiros

The autonomous measurement of tree traits, such as branching structure, branch diameters, branch lengths, and branch angles, is required for tasks such as robotic pruning of trees…

cs.CV2017★ 4 cited

Fast and robust curve skeletonization for real-world elongated objects

Amy Tabb, Henry Medeiros

We consider the problem of extracting curve skeletons of three-dimensional, elongated objects given a noisy surface, which has applications in agricultural contexts such as extract…

cs.CV2017★ 20 cited

Automatic segmentation of trees in dynamic outdoor environments

Amy Tabb, Henry Medeiros

Segmentation in dynamic outdoor environments can be difficult when the illumination levels and other aspects of the scene cannot be controlled. Specifically in orchard and vineyard…

cs.CE2016★ 63 cited

Scale-Dependent Pedotransfer Functions Reliability for Estimating Saturated Hydraulic Conductivity

Behzad Ghanbarian, Vahid Taslimitehrani, Yakov A. Pachepsky

Saturated hydraulic conductivity Ksat is a fundamental characteristic in modeling flow and contaminant transport in soils and sediments. Therefore, many models have been developed…

cs.CE2015★ 91 cited

Measurement Scale Effect on Prediction of Soil Water Retention Curve and Saturated Hydraulic Conductivity

Behzad Ghanbarian, Vahid Taslimitehrani, Guozhu Dong +1

Soil water retention curve (SWRC) and saturated hydraulic conductivity (SHC) are key hydraulic properties for unsaturated zone hydrology and groundwater. In particular, SWRC provid…

cond-mat.stat-mech2014★ 46 cited

Two-strain competition in quasi-neutral stochastic disease dynamics

Oleg Kogan, Michael Khasin, Baruch Meerson +2

We develop a new perturbation method for studying quasi-neutral competition in a broad class of stochastic competition models, and apply it to the analysis of fixation of competing…

q-bio.PE2013★ 573 cited

Worldwide Patterns of Ancestry, Divergence, and Admixture in Domesticated Cattle

Jared E. Decker, Stephanie D. McKay, Megan M. Rolf +17

The domestication and development of cattle has considerably impacted human societies, but the histories of cattle breeds have been poorly understood especially for African, Asian,…

q-bio.PE2013★ 1 cited

The genomic impacts of drift and selection for hybrid performance in maize

Justin P. Gerke, Jode W. Edwards, Katherine E. Guill +2

Modern maize breeding relies upon selection in inbreeding populations to improve the performance of cross-population hybrids. The United States Department of Agriculture - Agricult…

physics.soc-ph2013★ 30 cited

Epidemic fronts in complex networks with metapopulation structure

Jason Hindes, Sarabjeet Singh, Christopher R. Myers +1

Infection dynamics have been studied extensively on complex networks, yielding insight into the effects of heterogeneity in contact patterns on disease spread. Somewhat separately,…

q-bio.GN2013★ 6 cited

Reducing assembly complexity of microbial genomes with single-molecule sequencing

Sergey Koren, Gregory P Harhay, Timothy PL Smith +6

Background: The short reads output by first- and second-generation DNA sequencing instruments cannot completely reconstruct microbial chromosomes. Therefore, most genomes have been…

q-bio.GN2012★ 596 cited

Comparative Analysis of Tandem Repeats from Hundreds of Species Reveals Unique Insights into Centromere Evolution

Daniël P. Melters, Keith R. Bradnam, Hugh A. Young +14

Centromeres are essential for chromosome segregation, yet their DNA sequences evolve rapidly. In most animals and plants that have been studied, centromeres contain megabase-scale…