169 citations
- Norwich Research ParkGB4 papers
- Semmelweis UniversityHU3 papers
- Eötvös Loránd UniversityHU2 papers
- Quadram InstituteGB2 papers
- University of East AngliaGB2 papers
- Barcelona Supercomputing CenterES1 paper
- Budapest University of Technology and EconomicsHU1 paper
- Dana-Farber Cancer InstituteUS1 paper
- École Polytechnique Fédérale de LausanneCH1 paper
- European Molecular Biology LaboratoryDE1 paper
- George Mason UniversityUS1 paper
- German Cancer Research CenterDE1 paper
7 papers
Applying the FAIR Principles to computational workflows
Sean R. Wilkinson, Meznah Aloqalaa, Khalid Belhajjame +20
Recent trends within computational and data sciences show an increasing recognition and adoption of computational workflows as tools for productivity and reproducibility that also…
Enrichment of gut microbiome strains for cultivation-free genome sequencing using droplet microfluidics
Anna Pryszlak, Tobias Wenzel, Kiley West Seitz +6
We report a droplet microfluidic method to target and sort individual cells directly from complex microbiome samples, and to prepare these cells for bulk whole genome sequencing wi…
The EntOptLayout Cytoscape plug-in for the efficient visualization of major protein complexes in protein-protein interaction and signalling networks
Bence Agg, Andrea Csaszar, Mate Szalay-Beko +5
Motivation: Network visualizations of complex biological datasets usually result in 'hairball' images, which do not discriminate network modules. Results: We present the EntOptLayo…
A kinetic theory for age-structured stochastic birth-death processes
Chris D. Greenman, Tom Chou
Classical age-structured mass-action models such as the McKendrick-von Foerster equation have been extensively studied but they are structurally unable to describe stochastic fluct…
Targets of drugs are generally, and targets of drugs having side effects are specifically good spreaders of human interactome perturbations
Aron R. Perez-Lopez, Kristof Z. Szalay, Denes Turei +4
Network-based methods are playing an increasingly important role in drug design. Our main question in this paper was whether the efficiency of drug target proteins to spread pertur…
ComPPI, a cellular compartment-specific database for protein-protein interaction network analysis
Daniel V. Veres, David M. Gyurko, Benedek Thaler +4
Here we present ComPPI, a cellular compartment specific database of proteins and their interactions enabling an extensive, compartmentalized protein-protein interaction network ana…