output
19992021
most citedComPPI, a cellular compartment-specific database for protein-protein interaction network analysis

169 citations

14 papers

q-bio.GN2021★ 33 cited

Enrichment of gut microbiome strains for cultivation-free genome sequencing using droplet microfluidics

Anna Pryszlak, Tobias Wenzel, Kiley West Seitz +6

We report a droplet microfluidic method to target and sort individual cells directly from complex microbiome samples, and to prepare these cells for bulk whole genome sequencing wi…

q-bio.MN2014★ 169 cited

ComPPI, a cellular compartment-specific database for protein-protein interaction network analysis

Daniel V. Veres, David M. Gyurko, Benedek Thaler +4

Here we present ComPPI, a cellular compartment specific database of proteins and their interactions enabling an extensive, compartmentalized protein-protein interaction network ana…

cond-mat.stat-mech2014★ 11 cited

Shaking-induced crystallization of dense sphere packings

D. P. Shinde, Anita Mehta, G. C. Barker

We use a hybrid Monte Carlo algorithm to simulate the shaking of spheres at different vibrational amplitudes, and find that spontaneous crystallisation occurs in specific dynamical…

cond-mat.soft2011★ 27 cited

Bridges in three-dimensional granular packings: experiments and simulations

Yixin Cao, Bandan Chakrabortty, G. C. Barker +2

In this letter, we present the first experimental study of bridge structures in three-dimensional dry granular packings. When bridges are small, they are predominantly 'linear', an…

cond-mat.soft2010

Finding bridges in packings of colloidal spheres

Matthew C. Jenkins, Mark D. Haw, Gary C. Barker +2

We identify putative load-bearing structures (bridges) in experimental colloidal systems studied by confocal microscopy. Bridges are co-operative structures that have been used to…

cond-mat.soft2006★ 34 cited

Long wavelength structural anomalies in jammed systems

Leonardo E. Silbert, Moises Silbert

The structural properties of static, jammed packings of monodisperse spheres in the vicinity of the jamming transition are investigated using large-scale computer simulations. At s…