output
20112026
most citedDirect-coupling analysis of residue co-evolution captures native contacts across many protein families

1.6k citations

Showing 2018Show all

6 papers · 1 filter

eess.IV2018★ 4 cited

Non-convex image reconstruction via Expectation Propagation

Anna Paola Muntoni, Rafael Díaz Hernández Rojas, Alfredo Braunstein +2

Tomographic image reconstruction can be mapped to a problem of finding solutions to a large system of linear equations which maximize a function that includes \textit{a priori} kno…

math.AP2018★ 4 cited

Global-in-time classical solutions and qualitative properties for the NNLIF neuron model with synaptic delay

María J. Cáceres, Pierre Roux, Delphine Salort +1

The Nonlinear Noisy Leaky Integrate and Fire (NNLIF) model is widely used to describe the dynamics of neural networks after a diffusive approximation of the mean-field limit of a s…

cond-mat.dis-nn2018★ 121 cited

The Mpemba effect in spin glasses is a persistent memory effect

Janus collaboration, M. Baity-Jesi, E. Calore +21

The Mpemba effect occurs when a hot system cools faster than an initially colder one, when both are refrigerated in the same thermal reservoir. Using the custom built supercomputer…

q-bio.BM2018

Spontaneous domain formation in disordered copolymers as a mechanism for chromosome structuring

Matteo Negri, Marco Gherardi, Guido Tiana +1

Motivated by the problem of domain formation in chromosomes, we studied a co--polymer model where only a subset of the monomers feel attractive interactions. These monomers are dis…

physics.soc-ph2018★ 34 cited

Zipf and Heaps laws from dependency structures in component systems

Andrea Mazzolini, Jacopo Grilli, Eleonora De Lazzari +3

Complex natural and technological systems can be considered, on a coarse-grained level, as assemblies of elementary components: for example, genomes as sets of genes, or texts as s…

q-bio.QM2018★ 161 cited

How pairwise coevolutionary models capture the collective residue variability in proteins

Matteo Figliuzzi, Pierre Barrat-Charlaix, Martin Weigt

Global coevolutionary models of homologous protein families, as constructed by direct coupling analysis (DCA), have recently gained popularity in particular due to their capacity t…