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- Centre National de la Recherche ScientifiqueFR66 papers
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5 papers · 1 filter
Individuality and universality in the growth-division laws of single E. coli cells
Andrew S. Kennard, Matteo Osella, Avelino Javer +5
The mean size of exponentially dividing E. coli cells cultured in different nutrient conditions is known to depend on the mean growth rate only. However, the joint fluctuations rel…
Soft bounds on diffusion produce skewed distributions and Gompertz growth
Salvatore Mandrà, Marco Cosentino Lagomarsino, Marco Gherardi
Constraints can affect dramatically the behavior of diffusion processes. Recently, we analyzed a natural and a technological system and reported that they perform diffusion-like di…
Combined collapse by bridging and self-adhesion in a prototypical polymer model inspired by the bacterial nucleoid
Vittore F. Scolari, Marco Cosentino Lagomarsino
Recent experimental results suggest that the E. coli chromosome feels a self-attracting interaction of osmotic origin, and is condensed in foci by bridging interactions. Motivated…
Large Pseudo-Counts and -Norm Penalties Are Necessary for the Mean-Field Inference of Ising and Potts Models
J. P. Barton, S. Cocco, E. De Leonardis +1
Mean field (MF) approximation offers a simple, fast way to infer direct interactions between elements in a network of correlated variables, a common, computationally challenging pr…
Fast and accurate multivariate Gaussian modeling of protein families: Predicting residue contacts and protein-interaction partners
Carlo Baldassi, Marco Zamparo, Christoph Feinauer +4
In the course of evolution, proteins show a remarkable conservation of their three-dimensional structure and their biological function, leading to strong evolutionary constraints o…