output
20112026
most citedDirect-coupling analysis of residue co-evolution captures native contacts across many protein families

1.6k citations

Showing 2015Show all

6 papers · 1 filter

physics.bio-ph2015★ 14 cited

An interplay of migratory and division forces as a generic mechanism for stem cell patterns

Edouard Hannezo, Alice Coucke, Jean-François Joanny

In many adult tissues, stem cells and differentiated cells are not homogeneously distributed : stem cells are arranged in periodic "niches", and differentiated cells are constantly…

q-bio.QM2015★ 69 cited

Inter-protein sequence co-evolution predicts known physical interactions in bacterial ribosomes and the trp operon

Christoph Feinauer, Hendrik Szurmant, Martin Weigt +1

Interaction between proteins is a fundamental mechanism that underlies virtually all biological processes. Many important interactions are conserved across a large variety of speci…

q-bio.BM2015★ 127 cited

Direct-Coupling Analysis of nucleotide coevolution facilitates RNA secondary and tertiary structure prediction

Eleonora De Leonardis, Benjamin Lutz, Sebastian Ratz +4

Despite the biological importance of non-coding RNA, their structural characterization remains challenging. Making use of the rapidly growing sequence databases, we analyze nucleot…

q-bio.QM2015★ 315 cited

Coevolutionary landscape inference and the context-dependence of mutations in beta-lactamase TEM-1

Matteo Figliuzzi, Hervé Jacquier, Alexander Schug +2

The quantitative characterization of mutational landscapes is a task of outstanding importance in evolutionary and medical biology: It is, e.g., of central importance for our under…

cond-mat.str-el2015★ 22 cited

Devil's staircase phase diagram of the fractional quantum Hall effect in the thin-torus limit

Pietro Rotondo, Luca Guido Molinari, Piergiorgio Ratti +1

After more than three decades the fractional quantum Hall effect still poses challenges to contemporary physics. Recent experiments point toward a fractal scenario for the Hall res…

cond-mat.dis-nn2015★ 45 cited

Dicke simulators with emergent collective quantum computational abilities

Pietro Rotondo, Marco Cosentino Lagomarsino, Giovanni Viola

Using an approach inspired from Spin Glasses, we show that the multimode disordered Dicke model is equivalent to a quantum Hopfield network. We propose variational ground states fo…