2.5k citations · 2.7k across the 13 of their papers we have counts for
5 papers · 1 filter
Conditional Network Analysis Identifies Candidate Regulator Genes in Human B Cells
Kai Wang, Nilanjana Banerjee, Adam Margolin +4
Cellular phenotypes are determined by the dynamical activity of networks of co-regulated genes. Elucidating such networks is crucial for the understanding of normal cell physiology…
ARACNE: An Algorithm for the Reconstruction of Gene Regulatory Networks in a Mammalian Cellular Context
Adam A. Margolin, Ilya Nemenman, Katia Basso +5
Background: Elucidating gene regulatory networks is crucial for understanding normal cell physiology and complex pathologic phenotypes. Existing computational methods for the genom…
On The Reconstruction of Interaction Networks with Applications to Transcriptional Regulation
Adam A. Margolin, Ilya Nemenman, Chris Wiggins +2
A novel information-theoretic method for reconstruction of interaction networks is introduced. We prove that the method is exact for some class of networks. Performance tests on la…
Information theory, multivariate dependence, and genetic network inference
Ilya Nemenman
We define the concept of dependence among multiple variables using maximum entropy techniques and introduce a graphical notation to denote the dependencies. Direct inference of inf…
Fluctuation-dissipation theorem and models of learning
Ilya Nemenman
Advances in statistical learning theory have resulted in a multitude of different designs of learning machines. But which ones are implemented by brains and other biological inform…