activity
19982026
most citedARACNE: An Algorithm for the Reconstruction of Gene Regulatory Networks in a Mammalian Cellular Context

2.5k citations · 4.7k across the 86 of their papers we have counts for

collaborators

86 papers

cs.AI2026

Multi-Agent Empowerment and Emergence of Complex Behavior in Groups

Tristan Shah, Ilya Nemenman, Daniel Polani +1

Intrinsic motivations are receiving increasing attention, i.e. behavioral incentives that are not engineered, but emerge from the interaction of an agent with its surroundings. In…

physics.bio-ph2025

Randomness with constraints: constructing minimal models for high-dimensional biology

Ilya Nemenman, Pankaj Mehta

Biologists and physicists have a rich tradition of modeling living systems with simple models composed of a few interacting components. Despite the remarkable success of this appro…

physics.plasm-ph2023

Physics-tailored machine learning reveals unexpected physics in dusty plasmas

Wentao Yu, Eslam Abdelaleem, Ilya Nemenman +1

Dusty plasma is a mixture of ions, electrons, and macroscopic charged particles that is commonly found in space and planetary environments. The particles interact through Coulomb f…

stat.ML2023★ 2 cited

Simultaneous Dimensionality Reduction: A Data Efficient Approach for Multimodal Representations Learning

Eslam Abdelaleem, Ahmed Roman, K. Michael Martini +1

We explore two primary classes of approaches to dimensionality reduction (DR): Independent Dimensionality Reduction (IDR) and Simultaneous Dimensionality Reduction (SDR). In IDR me…

cs.LG2023★ 3 cited

Deep Variational Multivariate Information Bottleneck -- A Framework for Variational Losses

Eslam Abdelaleem, Ilya Nemenman, K. Michael Martini

Variational dimensionality reduction methods are widely used for their accuracy, generative capabilities, and robustness. We introduce a unifying framework that generalizes both su…

physics.bio-ph2023★ 3 cited

Extrinsic vs Intrinsic Criticality in Systems with Many Components

Vudtiwat Ngampruetikorn, Ilya Nemenman, David J. Schwab

Biological systems with many components often exhibit seemingly critical behaviors, characterized by atypically large correlated fluctuations. Yet the underlying causes remain uncl…