269 citations · 1.3k across the 20 of their papers we have counts for
3 papers · 1 filter
Shouji: A Fast and Efficient Pre-Alignment Filter for Sequence Alignment
Mohammed Alser, Hasan Hassan, Akash Kumar +2
Motivation: The ability to generate massive amounts of sequencing data continues to overwhelm the processing capability of existing algorithms and compute infrastructures. In this…
Coinami: A Cryptocurrency with DNA Sequence Alignment as Proof-of-work
Atalay M. Ileri, Halil I. Ozercan, Alper Gundogdu +3
Rate of growth of the amount of data generated using the high throughput sequencing (HTS) platforms now exceeds the growth stipulated by Moore's Law. The HTS data is expected to su…
Optimal Seed Solver: Optimizing Seed Selection in Read Mapping
Hongyi Xin, Richard Zhu, Sunny Nahar +5
Motivation: Optimizing seed selection is an important problem in read mapping. The number of non-overlapping seeds a mapper selects determines the sensitivity of the mapper while t…