193 citations · 761 across the 33 of their papers we have counts for
4 papers · 1 filter
MicroRNAs as a selective channel of communication between competing RNAs: a steady-state theory
Matteo Figliuzzi, Enzo Marinari, Andrea De Martino
It has recently been suggested that the competition for a finite pool of microRNAs (miRNA) gives rise to effective interactions among their common targets (competing endogenous RNA…
A scalable algorithm to explore the Gibbs energy landscape of genome-scale metabolic networks
Daniele De Martino, Matteo Figliuzzi, Andrea De Martino +1
The integration of various types of genomic data into predictive models of biological networks is one of the main challenges currently faced by computational biology. Constraint-ba…
Reaction networks as systems for resource allocation: A variational principle for their non-equilibrium steady states
Andrea De Martino, Daniele De Martino, Roberto Mulet +1
Within a fully microscopic setting, we derive a variational principle for the non-equilibrium steady states of chemical reaction networks, valid for time-scales over which chemical…
Von Neumann's growth model: statistical mechanics and biological applications
Andrea De Martino, Enzo Marinari, Andrea Romualdi
We review recent work on the statistical mechanics of Von Neumann's growth model and discuss its application to cellular metabolic networks. In this context, we present a detailed…