Towards a model for protein production rates
arXiv:q-bio/0606043 · doi:10.1007/s10955-006-9134-7
Abstract
This submission is a duplicate of arXiv:q-bio/0602024 and has been removed.
8 pages, 8 figures; This submission is a duplicate of arXiv:q-bio/0602024, and has been removed
References in corpus (7)
- Phase transitions in an exactly soluble one-dimensional exclusion process
- The totally asymmetric exclusion process with extended objects, a model for protein synthesis
- Clustered bottlenecks in mRNA translation and protein synthesis
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- Disordered asymmetric simple exclusion process: mean-field treatment
- Queuing Transitions in the Asymmetric Simple Exclusion Process
Cited by in corpus (42)
- Non-equilibrium statistical mechanics: From a paradigmatic model to biological transport
- Modeling Translation in Protein Synthesis with TASEP: A Tutorial and Recent Developments
- Inhomogeneous exclusion processes with extended objects: The effect of defect locations
- Mixed population of competing TASEPs with a shared reservoir of particles
- Role of the particle's stepping cycle in an asymmetric exclusion process: A model of mRNA translation
- Interacting RNA polymerase motors on DNA track: effects of traffic congestion and intrinsic noise on RNA synthesis
- Far-from-equilibrium transport with constrained resources
- Competition between Multiple Totally Asymmetric Simple Exclusion Processes for a Finite Pool of Resources
- Stochastic kinetics of ribosomes: single motor properties and collective behavior
- Phase diagram and edge effects in the ASEP with bottlenecks
- Feedback and Fluctuations in a Totally Asymmetric Simple Exclusion Process with Finite Resources
- Dynamical modeling of microRNA action on the protein translation process
- Single-Bottleneck Approximation for Driven Lattice Gases with Disorder and Open Boundary Conditions
- Twenty five years after KLS: A celebration of non-equilibrium statistical mechanics
- Asymmetric Exclusion Processes with Disorder: Effect of Correlations
- Multiple phase transitions in a system of exclusion processes with limited reservoirs of particles and fuel carriers
- Distribution of dwell times of a ribosome: effects of infidelity, kinetic proofreading and ribosome crowding
- Defect-induced phase transition in the asymmetric simple exclusion process
- Fluctuations in protein synthesis from a single RNA template: stochastic kinetics of ribosomes
- Nonequilibrium steady states in asymmetric exclusion processes on a ring with bottlenecks
- Collective dynamics of an inhomogeneous two-channel exclusion process: Theory and Monte Carlo simulations
- Disordered driven lattice gases with boundary reservoirs and Langmuir kinetics
- Modeling protein synthesis from a physicist's perspective: a toy model
- Entrainment and unit velocity: Surprises in an accelerated exclusion process
- Interplay between finite resources and local defect in an asymmetric simple exclusion process
- Power Spectra of a Constrained Totally Asymmetric Simple Exclusion Process
- Phase coexistences and particle non-conservation in a closed asymmetric exclusion process with inhomogeneities
- Intra-cellular traffic: bio-molecular motors on filamentary tracks
- Nonequilibrium steady states in a closed inhomogeneous asymmetric exclusion process with particle nonconservation
- Understanding the edge effect in TASEP with mean-field theoretic approaches
- Competition for finite resources
- Interference of two co-directional exclusion processes in the presence of a static bottleneck: a biologically motivated model
- Shepherd Model for Knot-Limited Polymer Ejection from a Capsid
- Asymmetric Exclusion Process with Global Hopping
- The fitness landscapes of translation
- Defect versus defect: stationary states of single file marching in periodic landscapes with road blocks
- Optimizing evacuation flow in a two-channel exclusion process
- Power spectra of TASEPs with a localized slow site
- Resource Letter: Bio-molecular Nano-machines: where Physics, Chemistry, Biology and Technology meet
- RNA polymerase interactions and elongation rate
- On the Structure of the Initiation and Elongation Rates that Maximize Protein Production in the Ribosome Flow Model
- Fluctuations in meta-population exclusion processes