216 citations · 519 across the 7 of their papers we have counts for
7 papers
Emergence of sector and spiral patterns from a two-species mutualistic cross-feeding model
Jiaqi. Lin, Hui. Sun, JiaJia Dong
The ubiquitous existence of microbial communities marks the importance of understanding how species interact within the community to coexist and their spatial organization. We stud…
Mass transport perspective on an accelerated exclusion process: Analysis of augmented current and unit-velocity phases
Jiajia Dong, Stefan Klumpp, R. K. P. Zia
In an accelerated exclusion process (AEP), each particle can "hop" to its adjacent site if empty as well as "kick" the frontmost particle when joining a cluster of size $\ell \leq…
Entrainment and unit velocity: Surprises in an accelerated exclusion process
Jiajia Dong, Stefan Klumpp, Royce K. P. Zia
We introduce a class of distance-dependent interactions in an accelerated exclusion process (AEP) inspired by the observation of transcribing RNA polymerase speeding up when "pushe…
Modeling Translation in Protein Synthesis with TASEP: A Tutorial and Recent Developments
R. K. P. Zia, J. J. Dong, B. Schmittmann
The phenomenon of protein synthesis has been modeled in terms of totally asymmetric simple exclusion processes (TASEP) since 1968. In this article, we provide a tutorial of the bio…
Inhomogeneous exclusion processes with extended objects: The effect of defect locations
J. J. Dong, B. Schmittmann, R. K. P. Zia
We study the effects of local inhomogeneities, i.e., slow sites of hopping rate , in a totally asymmetric simple exclusion process (TASEP) for particles of size …
Towards a model for protein production rates
J. J. Dong, B. Schmittmann, R. K. P. Zia
This submission is a duplicate of arXiv:q-bio/0602024 and has been removed.