Odd elasticity of a catalytic micromachine
arXiv:2211.16089 · doi:10.7566/JPSJ.92.074801
Abstract
We perform numerical simulations of a model micromachine driven by catalytic chemical reactions. Our model includes a mechano-chemical coupling between the structural variables and the nonequilibrium variable describing the catalytic reactions. The time-correlation functions of the structural variables are calculated and further analyzed in terms of odd Langevin dynamics. We obtain the effective odd elastic constant that manifests the broken time-reversal symmetry of a catalytic micromachine. Within the simulation, we separately estimate the quantity called nonreciprocality and show that its behavior is similar to that of the odd elasticity.Our approach suggests a new method to extract the nonequilibrium properties of a micromachine only by measuring its structural dynamics.
References in corpus (37)
- Active Particles in Complex and Crowded Environments
- What is Nonreciprocity?
- Non-reciprocal phase transitions
- Equality connecting energy dissipation with violation of fluctuation-response relation
- Odd elasticity
- Odd viscosity in chiral active fluids
- Odd dynamics of living chiral crystals
- Odd Viscosity and Odd Elasticity
- Analytic results for the three-sphere swimmer at low Reynolds number
- Theory of nonequilibrium free energy transduction by molecular machines
- Hydrodynamic Collective Effects of Active Protein Machines in Solution and Lipid Bilayers
- Statistical mechanics of a chiral active fluid
- Theoretical Perspectives on Biological Machines
- Topological defects in solids with odd elasticity
- Non-Hermitian Topological Metamaterials with Odd Elasticity
- Time reversal symmetry breaking and odd viscosity in active fluids: Green-Kubo and NEMD results
- Topological Invariant and Anomalous Edge Modes of Strongly Nonlinear Systems
- Non-reciprocal response of a two-dimensional fluid with odd viscosity
- Time reversal symmetry breaking in two-dimensional non-equilibrium viscous fluids
- Nonlinearity of Mechanochemical Motions in Motor Proteins
- Self-organized swimming with odd elasticity
- Hydrodynamic lift of a two-dimensional liquid domain with odd viscosity
- Fluctuation Properties of Steady-State Langevin Systems
- Time-correlation functions for odd Langevin systems
- Mechanochemical enzymes and protein machines as hydrodynamic force dipoles: The active dimer model
- Nonequilibrium Transport Induced by Biological Nanomachines
- Non-equilibrium probability flux of a thermally driven micromachine
- Synchronization and enhanced catalysis of mechanically coupled enzymes
- The Onsager-Machlup Integral for Non-reciprocal Systems with Odd Elasticity
- Onsager's variational principle for nonreciprocal systems with odd elasticity
- Odd Microswimmer
- Nonequilibrium oscillations, probability angular momentum, and the climate system
- Mechanics of cell crawling by means of force-free cyclic motion
- Nonreciprocality of a micromachine driven by a catalytic chemical reaction
- Pair dynamics of active force dipoles in an odd-viscous fluid
- Irreversibility and entropy production of a thermally driven micromachine
- Simulations of Odd Microswimmers
Cited by in corpus (5)
- Odd elastohydrodynamics: non-reciprocal living material in a viscous fluid
- Generalized Three-Sphere Microswimmers
- Non-reciprocal Phase Separations with Non-conserved Order Parameters
- A minimal model with stochastically broken reciprocity
- Irreversibility of stochastic state transitions in Langevin systems with odd elasticity