Neural Network Potentials for Chemistry: Concepts, Applications and Prospects
arXiv:2209.11581 · doi:10.1039/D2DD00102K
Abstract
Artificial Neural Networks (ANN) are already heavily involved in methods and applications for frequent tasks in the field of computational chemistry such as representation of potential energy surfaces (PES) and spectroscopic predictions. This perspective provides an overview of the foundations of neural network-based full-dimensional potential energy surfaces, their architectures, underlying concepts, their representation and applications to chemical systems. Methods for data generation and training procedures for PES construction are discussed and means for error assessment and refinement through transfer learning are presented. A selection of recent results illustrates the latest improvements regarding accuracy of PES representations and system size limitations in dynamics simulations, but also NN application enabling direct prediction of physical results without dynamics simulations. The aim is to provide an overview for the current state-of-the-art NN approaches in computational chemistry and also to point out the current challenges in enhancing reliability and applicability of NN methods on larger scale.
References in corpus (85)
- A Survey on Deep Learning in Medical Image Analysis
- Crystal Graph Convolutional Neural Networks for an Accurate and Interpretable Prediction of Material Properties
- On representing chemical environments
- Machine learning and the physical sciences
- Fast and Accurate Modeling of Molecular Atomization Energies with Machine Learning
- Deep Potential Molecular Dynamics: a scalable model with the accuracy of quantum mechanics
- SchNet - a deep learning architecture for molecules and materials
- DeePMD-kit: A deep learning package for many-body potential energy representation and molecular dynamics
- Interpretable machine learning: definitions, methods, and applications
- ANI-1: An extensible neural network potential with DFT accuracy at force field computational cost
- Learning to Plan Chemical Syntheses
- E(3)-Equivariant Graph Neural Networks for Data-Efficient and Accurate Interatomic Potentials
- A Survey of Deep Learning Techniques for Autonomous Driving
- Machine Learning Force Fields
- Quantum-Chemical Insights from Deep Tensor Neural Networks
- Machine Learning of Accurate Energy-Conserving Molecular Force Fields
- PhysNet: A Neural Network for Predicting Energies, Forces, Dipole Moments and Partial Charges
- Unmasking Clever Hans Predictors and Assessing What Machines Really Learn
- Machine learning for molecular simulation
- Big Data meets Quantum Chemistry Approximations: The -Machine Learning Approach
- Combining Machine Learning and Computational Chemistry for Predictive Insights Into Chemical Systems
- Machine Learning Unifies the Modelling of Materials and Molecules
- Deep physical neural networks enabled by a backpropagation algorithm for arbitrary physical systems
- Towards Exact Molecular Dynamics Simulations with Machine-Learned Force Fields
- Machine learning prediction errors better than DFT accuracy
- Machine Learning of Molecular Electronic Properties in Chemical Compound Space
- Towards Explainable Artificial Intelligence
- A Fourth-Generation High-Dimensional Neural Network Potential with Accurate Electrostatics Including Non-local Charge Transfer
- Physics-inspired structural representations for molecules and materials
- Machine Learning Molecular Dynamics for the Simulation of Infrared Spectra
- Neural networks for the prediction organic chemistry reactions
- Machine learning for electronically excited states of molecules
- Deep Learning and its Application to LHC Physics
- SpookyNet: Learning Force Fields with Electronic Degrees of Freedom and Nonlocal Effects
- FCHL revisited: faster and more accurate quantum machine learning
- ANI-1: A data set of 20M off-equilibrium DFT calculations for organic molecules
- Interatomic potentials for ionic systems with density functional accuracy based on charge densities obtained by a neural network
- Neural Network Based in Silico Simulation of Combustion Reactions
- Hierarchical modeling of molecular energies using a deep neural network
- WACSF - Weighted Atom-Centered Symmetry Functions as Descriptors in Machine Learning Potentials
- Embedded Atom Neural Network Potentials: Efficient and Accurate Machine Learning with a Physically Inspired Representation
- Higher-Order Explanations of Graph Neural Networks via Relevant Walks
- Understanding molecular representations in machine learning: The role of uniqueness and target similarity
- Combining SchNet and SHARC: The SchNarc machine learning approach for excited-state dynamics
- Deep Potentials for Materials Science
- On the Completeness of Atomic Structure Representations
- Unsupervised machine learning in atomistic simulations, between predictions and understanding
- Machine Learning in QM/MM Molecular Dynamics Simulations of Condensed-Phase Systems
- Introduction to the Diffusion Monte Carlo Method
- Sampling molecular conformations and dynamics in a multi-user virtual reality framework
- -Machine Learning for Potential Energy Surfaces: A PIP approach to bring a DFT-based PES to CCSD(T) Level of Theory
- Representations of molecules and materials for interpolation of quantum-mechanical simulations via machine learning
- QM7-X: A comprehensive dataset of quantum-mechanical properties spanning the chemical space of small organic molecules
- Automated Fitting of Neural Network Potentials at Coupled Cluster Accuracy: Protonated Water Clusters as Testing Ground
- Toward Explainable AI for Regression Models
- Efficient non-parametric fitting of potential energy surfaces for polyatomic molecules with Gaussian processes
- Training neural nets to learn reactive potential energy surfaces using interactive quantum chemistry in virtual reality
- Gaussian Moments as Physically Inspired Molecular Descriptors for Accurate and Scalable Machine Learning Potentials
- Bayesian machine learning for quantum molecular dynamics
- Breaking the Coupled Cluster Barrier for Machine Learned Potentials of Large Molecules: The Case of 15-atom Acetylacetone
- The Ecological Impact of High-performance Computing in Astrophysics
- Structure, Organization and Heterogeneity of Water-Containing Deep Eutectic Solvents
- Reactive Dynamics and Spectroscopy of Hydrogen Transfer from Neural Network-Based Reactive Potential Energy Surfaces
- Roaming leads to amino acid photodamage: A deep learning study of tyrosine
- Permutationally invariant polynomial regression for energies and gradients, using reverse differentiation, achieves orders of magnitude speed-up with high precision compared to other machine learning methods
- BuRNN: Buffer Region Neural Network Approach for Polarizable-Embedding Neural Network / Molecular Mechanics Simulations
- The Reaction: Thermal and Vibrational Relaxation Rates for the A, A and A States
- Predicting Properties of Periodic Systems from Cluster Data: A Case Study of Liquid Water
- Fast and Sample-Efficient Interatomic Neural Network Potentials for Molecules and Materials Based on Gaussian Moments
- Near dissociation states for H-He on MRCI and FCI potential energy surfaces
- The MD17 Datasets from the Perspective of Datasets for Gas-Phase "Small" Molecule Potentials
- Transferability of machine learning potentials: Protonated water neural network potential applied to the protonated water hexamer
- Manifolds of quasi-constant SOAP and ACSF fingerprints and the resulting failure to machine learn four-body interactions
- Double Proton Transfer in Hydrated Formic Acid Dimer: Interplay of Spatial Symmetry and Solvent-Generated Force on Reactivity
- Training atomic neural networks using fragment-based data generated in virtual reality
- Impact of the characteristics of quantum chemical databases on machine learning predictions of tautomerization energies
- Machine Learning Product State Distributions from Initial Reactant States for a Reactive Atom-Diatom Collision System
- Through the eyes of a descriptor: Constructing complete, invertible descriptions of atomic environments
- Prediction uncertainty validation for computational chemists
- Dynamics on Multiple Potential Energy Surfaces: Quantitative Studies of Elementary Processes Relevant to Hypersonics
- Machine Learning for Observables: Reactant to Product State Distributions for Atom-Diatom Collisions
- Wavelet Scattering Networks for Atomistic Systems with Extrapolation of Material Properties
- A Machine Learning Approach for Rate Constants III: Application to the Cl(P) + CH CH + HCl Reaction
- The Homunculus Brain and Categorical Logic
- Rate Constants for Fine-Structure Excitations in O-H Collisions with Error Bars Obtained by Machine Learning
Cited by in corpus (11)
- Lifelong Machine Learning Potentials
- ArcaNN: automated enhanced sampling generation of training sets for chemically reactive machine learning interatomic potentials
- PhysNet Meets CHARMM: A Framework for Routine Machine Learning / Molecular Mechanics Simulations
- Transfer-Learned Potential Energy Surfaces: Towards Microsecond-Scale Molecular Dynamics Simulations in the Gas Phase at CCSD(T) Quality
- CoRe Optimizer: An All-in-One Solution for Machine Learning
- Aqueous Solution Chemistry In Silico and the Role of Data Driven Approaches
- Anticipating the Selectivity of Intramolecular Cyclization Reaction Pathways with Neural Network Potentials
- Hierarchical quantum embedding by machine learning for large molecular assemblies
- Atomistic Simulations of Oxide-Water Interfaces using Machine Learning Potentials
- Lifelong Machine Learning Potentials for Chemical Reaction Network Explorations
- A Simple and Scalable Kernel Density Approach for Reliable Uncertainty Quantification in Atomistic Machine Learning