ArcaNN: automated enhanced sampling generation of training sets for chemically reactive machine learning interatomic potentials
arXiv:2407.07751 · doi:10.1039/D4DD00209A
Abstract
The emergence of artificial intelligence has profoundly impacted computational chemistry, particularly through machine-learned potentials (MLPs), which offer a balance of accuracy and efficiency in calculating atomic energies and forces to be used in molecular dynamics simulations. These MLPs have significantly advanced molecular dynamics simulations across various applications, including large-scale simulations of materials, interfaces, and chemical reactions. Despite these advances, the construction of training datasets - a critical component for the accuracy of MLPs - has not received proportional attention. This is particularly critical for chemical reactivity which depends on rare barrier-crossing events. Here we address this gap by introducing ArcaNN, a comprehensive framework designed for generating training datasets for reactive MLPs. ArcaNN employs a concurrent learning approach combined with advanced sampling techniques to ensure accurate representation of high-energy geometries. The framework integrates automated processes for iterative training, exploration, new configuration selection, and energy and force labeling, while ensuring reproducibility and documentation. We demonstrate ArcaNN's capabilities through a paradigm nucleophilic substitution reaction in solution, showcasing its effectiveness, the uniformly low error of the resulting MLP everywhere along the chemical reaction coordinate, and its potential for broad applications in reactive molecular dynamics. We also provide guidelines on how to assess the quality of a NNP for a reactive system.
for associated program, see https://github.com/arcann-chem/arcann_training
References in corpus (35)
- Canonical sampling through velocity-rescaling
- Escaping free-energy minima
- CP2K: An Electronic Structure and Molecular Dynamics Software Package -- Quickstep: Efficient and Accurate Electronic Structure Calculations
- PLUMED 2: New feathers for an old bird
- Well-Tempered Metadynamics: A Smoothly Converging and Tunable Free-Energy Method
- Gaussian Approximation Potentials: the accuracy of quantum mechanics, without the electrons
- Deep Potential Molecular Dynamics: a scalable model with the accuracy of quantum mechanics
- DeePMD-kit: A deep learning package for many-body potential energy representation and molecular dynamics
- ANI-1: An extensible neural network potential with DFT accuracy at force field computational cost
- E(3)-Equivariant Graph Neural Networks for Data-Efficient and Accurate Interatomic Potentials
- Quantum-Chemical Insights from Deep Tensor Neural Networks
- PhysNet: A Neural Network for Predicting Energies, Forces, Dipole Moments and Partial Charges
- DP-GEN: A concurrent learning platform for the generation of reliable deep learning based potential energy models
- Combining Machine Learning and Computational Chemistry for Predictive Insights Into Chemical Systems
- Machine Learning Unifies the Modelling of Materials and Molecules
- Towards Exact Molecular Dynamics Simulations with Machine-Learned Force Fields
- DeePMD-kit v2: A software package for Deep Potential models
- A Fourth-Generation High-Dimensional Neural Network Potential with Accurate Electrostatics Including Non-local Charge Transfer
- Active Learning of Uniformly Accurate Inter-atomic Potentials for Materials Simulation
- Rethinking Metadynamics: from bias potentials to probability distributions
- i-PI 2.0: A Universal Force Engine for Advanced Molecular Simulations
- The Phase Diagram of a Deep Potential Water Model
- Hierarchical modeling of molecular energies using a deep neural network
- A foundation model for atomistic materials chemistry
- 86 PFLOPS Deep Potential Molecular Dynamics simulation of 100 million atoms with ab initio accuracy
- A deep potential model with long-range electrostatic interactions
- Neural Network Potentials for Chemistry: Concepts, Applications and Prospects
- How to validate machine-learned interatomic potentials
- Phase equilibrium of water with hexagonal and cubic ice using the SCAN functional
- Tutorial: How to Train a Neural Network Potential
- Differentiable sampling of molecular geometries with uncertainty-based adversarial attacks
- Structural Phase Transitions in SrTiO3 from Deep Potential Molecular Dynamics
- Uncertainty-biased molecular dynamics for learning uniformly accurate interatomic potentials
- Reducing the cost of neural network potential generation for reactive molecular systems
- Intramolecular and water mediated tautomerism of solvated glycine
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