Automatic Annotation of Hip Anatomy in Fluoroscopy for Robust and Efficient 2D/3D Registration
arXiv:1911.07042 · doi:10.1007/s11548-020-02162-7
Abstract
Fluoroscopy is the standard imaging modality used to guide hip surgery and is therefore a natural sensor for computer-assisted navigation. In order to efficiently solve the complex registration problems presented during navigation, human-assisted annotations of the intraoperative image are typically required. This manual initialization interferes with the surgical workflow and diminishes any advantages gained from navigation. We propose a method for fully automatic registration using annotations produced by a neural network. Neural networks are trained to simultaneously segment anatomy and identify landmarks in fluoroscopy. Training data is obtained using an intraoperatively incompatible 2D/3D registration of hip anatomy. Ground truth 2D labels are established using projected 3D annotations. Intraoperative registration couples an intensity-based strategy with annotations inferred by the network and requires no human assistance. Ground truth labels were obtained in 366 fluoroscopic images across 6 cadaveric specimens. In a leave-one-subject-out experiment, networks obtained mean dice coefficients for left and right hemipelves, left and right femurs of 0.86, 0.87, 0.90, and 0.84. The mean 2D landmark error was 5.0 mm. The pelvis was registered within 1 degree for 86% of the images when using the proposed intraoperative approach with an average runtime of 7 seconds. In comparison, an intensity-only approach without manual initialization, registered the pelvis to 1 degree in 18% of images. We have created the first accurately annotated, non-synthetic, dataset of hip fluoroscopy. By using these annotations as training data for neural networks, state of the art performance in fluoroscopic segmentation and landmark localization was achieved. Integrating these annotations allows for a robust, fully automatic, and efficient intraoperative registration during fluoroscopic navigation of the hip.
arXiv commentRevised article to address reviewer comments. Accepted to IPCAI 2020. Supplementary video at https://youtu.be/5AwGlNkcp9o and dataset/code at https://github.com/rg2/DeepFluoroLabeling-IPCAI2020
References in corpus (5)
- Batch Normalization: Accelerating Deep Network Training by Reducing Internal Covariate Shift
- Fully Convolutional Networks for Semantic Segmentation
- Pose Estimation of Periacetabular Osteotomy Fragments with Intraoperative X-Ray Navigation
- Patch-Based Image Similarity for Intraoperative 2D/3D Pelvis Registration During Periacetabular Osteotomy
- Localizing dexterous surgical tools in X-ray for image-based navigation
Cited by in corpus (10)
- Colonoscopy 3D Video Dataset with Paired Depth from 2D-3D Registration
- Intraoperative 2D/3D Image Registration via Differentiable X-ray Rendering
- X-Ray to CT Rigid Registration Using Scene Coordinate Regression
- Multistep Automated Data Labelling Procedure (MADLaP) for Thyroid Nodules on Ultrasound: An Artificial Intelligence Approach for Automating Image Annotation
- Fast and Automatic Periacetabular Osteotomy Fragment Pose Estimation Using Intraoperatively Implanted Fiducials and Single-View Fluoroscopy
- Generalizing Spatial Transformers to Projective Geometry with Applications to 2D/3D Registration
- Veriserum: A dual-plane fluoroscopic dataset with knee implant phantoms for deep learning in medical imaging
- The Impact of Loss Functions and Scene Representations for 3D/2D Registration on Single-view Fluoroscopic X-ray Pose Estimation
- NeuralBoneReg: An Instance-Specific Label-Free Point Cloud-Based Method for Multi-Modal Bone Surface Registration
- Transfer Learning from an Artificial Radiograph-landmark Dataset for Registration of the Anatomic Skull Model to Dual Fluoroscopic X-ray Images