Bond Graph Representation of Chemical Reaction Networks
arXiv:1809.00449 · doi:10.1109/TNB.2018.2876391
Abstract
The Bond Graph approach and the Chemical Reaction Network approach to modelling biomolecular systems developed independently. This paper brings together the two approaches by providing a bond graph interpretation of the chemical reaction network concept of complexes. Both closed and open systems are discussed. The method is illustrated using a simple enzyme-catalysed reaction and a trans-membrane transporter.