6 citations · 6 across the 2 of their papers we have counts for
7 papers
Bond Graphs Unify Stoichiometric Analysis and Thermodynamics
Peter J. Gawthrop
Whole-cell modelling is constrained by the laws of nature in general and the laws of thermodynamics in particular. This paper shows how one prolific source of information, stoichio…
Energy-based Modelling of the Feedback Control of Biomolecular Systems with Cyclic Flow Modulation
Peter J Gawthrop
Energy-based modelling brings engineering insight to the understanding of biomolecular systems. It is shown how well-established control engineering concepts, such as loop-gain, ar…
Computer-aided modelling of complex physical systems with BondGraphTools
Peter Cudmore, Peter J. Gawthrop, Michael Pan +1
BondGraphTools is a Python library for scripted modelling of complex multi-physics systems. In contrast to existing modelling solutions, BondGraphTools is based upon the well estab…
Physically-Plausible Modelling of Biomolecular Systems: A Simplified, Energy-Based Model of the Mitochondrial Electron Transport Chain
Peter J. Gawthrop, Peter Cudmore, Edmund J. Crampin
Systems biology and whole-cell modelling are demanding increasingly comprehensive mathematical models of cellular biochemistry. These models require the development of simplified m…
Bond Graph Representation of Chemical Reaction Networks
Peter J. Gawthrop, Edmund J. Crampin
The Bond Graph approach and the Chemical Reaction Network approach to modelling biomolecular systems developed independently. This paper brings together the two approaches by provi…
Biomolecular System Energetics
Peter J. Gawthrop, Edmund J. Crampin
Efficient energy transduction is one driver of evolution; and thus understanding biomolecular energy transduction is crucial to understanding living organisms. As an energy-orienta…