Optimal implementations for reliable circadian clocks
arXiv:1402.1268 · doi:10.1103/PhysRevLett.113.108101
Abstract
Circadian rhythms are acquired through evolution to increase the chances for survival through synchronizing with the daylight cycle. Reliable synchronization is realized through two trade-off properties: regularity to keep time precisely, and entrainability to synchronize the internal time with daylight. We found by using a phase model with multiple inputs that achieving the maximal limit of regularity and entrainability entails many inherent features of the circadian mechanism. At the molecular level, we demonstrate the role sharing of two light inputs, phase advance and delay, as is well observed in mammals. At the behavioral level, the optimal phase-response curve inevitably contains a dead zone, a time during which light pulses neither advance nor delay the clock. We reproduce the results of phase-controlling experiments entrained by two types of periodic light pulses. Our results indicate that circadian clocks are designed optimally for reliable clockwork through evolution.
5 pages, 4 figures; 6 pages of supplemental material with 2 figures
References in corpus (2)
Cited by in corpus (12)
- Uncertainty relations in stochastic processes: An information inequality approach
- Optimizing stability of mutual synchronization between a pair of limit-cycle oscillators with weak cross coupling
- Period Robustness and Entrainability of the Kai System to Changing Nucleotide Concentrations
- Optimal entrainment of circadian clocks in the presence of noise
- Design principles for biochemical oscillations with limited energy resources
- Thermodynamics of collective enhancement of precision
- Multi-dimensional biochemical information processing of dynamical patterns
- Variational superposed Gaussian approximation for time-dependent solutions of Langevin equations
- Improved estimation for energy dissipation in biochemical oscillations
- Optimal temporal patterns for dynamical cellular signaling
- Temperature compensation via cooperative stability in protein degradation
- An algebraic method to calculate parameter regions for constrained steady-state distribution in stochastic reaction networks