34 citations
3 papers
physics.comp-ph2007★ 18 cited
Wang-Landau molecular dynamics technique to search for low-energy conformational space of proteins
Takehiro Nagasima, Akira R. Kinjo, Takashi Mitsui +1
Multicanonical molecular dynamics (MD) is a powerful technique for sampling conformations on rugged potential surfaces such as protein. However, it is notoriously difficult to esti…
q-bio.BM2005★ 19 cited
Predicting Secondary Structures, Contact Numbers, and Residue-wise Contact Orders of Native Protein Structure from Amino Acid Sequence by Critical Random Networks
Akira R. Kinjo, Ken Nishikawa
Prediction of one-dimensional protein structures such as secondary structures and contact numbers is useful for the three-dimensional structure prediction and important for the und…
q-bio.BM2005★ 34 cited
Recoverable One-dimensional Encoding of Three-dimensional Protein Structures
Akira R. Kinjo, Ken Nishikawa
Protein one-dimensional (1D) structures such as secondary structure and contact number provide intuitive pictures to understand how the native three-dimensional (3D) structure of a…