most citedRecoverable One-dimensional Encoding of Three-dimensional Protein Structures

34 citations

7 papers

cond-mat.str-el200516 cited

Mechanism of Ambipolar Field-Effect Carrier Injections in One-Dimensional Mott Insulators

Kenji Yonemitsu

To clarify the mechanism of recently reported, ambipolar carrier injections into quasi-one-dimensional Mott insulators on which field-effect transistors are fabricated, we employ t…

q-bio.BM200519 cited

Predicting Secondary Structures, Contact Numbers, and Residue-wise Contact Orders of Native Protein Structure from Amino Acid Sequence by Critical Random Networks

Akira R. Kinjo, Ken Nishikawa

Prediction of one-dimensional protein structures such as secondary structures and contact numbers is useful for the three-dimensional structure prediction and important for the und…

physics.chem-ph200520 cited

Site-site memory equation approach in study of density/pressure dependence of translational diffusion coefficient and rotational relaxation time of polar molecular solutions: acetonitrile in water, methanol in water, and methanol in acetonitrile

A. E. Kobryn, T. Yamaguchi, F. Hirata

We present results of theoretical study and numerical calculation of the dynamics of molecular liquids based on combination of the memory equation formalism and the reference inter…

q-bio.BM200534 cited

Recoverable One-dimensional Encoding of Three-dimensional Protein Structures

Akira R. Kinjo, Ken Nishikawa

Protein one-dimensional (1D) structures such as secondary structure and contact number provide intuitive pictures to understand how the native three-dimensional (3D) structure of a…

cond-mat.str-el200414 cited

Phase Transition in a One-Dimensional Extended Peierls-Hubbard Model with a Pulse of Oscillating Electric Field: III. Interference Caused by a Double Pulse

Kenji Yonemitsu

In order to study consequences of the differences between the ionic-to-neutral and neutral-to-ionic transitions in the one-dimensional extended Peierls-Hubbard model with alternati…

cond-mat.str-el200422 cited

Phase Transition in a One-Dimensional Extended Peierls-Hubbard Model with a Pulse of Oscillating Electric Field: II. Linear Behavior in Neutral-to-Ionic Transition

Kenji Yonemitsu

Dynamics of charge density and lattice displacements after the neutral phase is photoexcited is studied by solving the time-dependent Schrödinger equation for a one-dimensional ext…