output
20072025
most citedPhylogenomics with Paralogs

112 citations

10 papers

cs.LG2025

Unsupervised risk factor identification across cancer types and data modalities via explainable artificial intelligence

Maximilian Ferle, Jonas Ader, Thomas Wiemers +7

Risk stratification is a key tool in clinical decision-making, yet current approaches often fail to translate sophisticated survival analysis into actionable clinical criteria. We…

q-bio.QM2024★ 3 cited

Privacy-Preserving Multi-Center Differential Protein Abundance Analysis with FedProt

Yuliya Burankova, Miriam Abele, Mohammad Bakhtiari +28

Quantitative mass spectrometry has revolutionized proteomics by enabling simultaneous quantification of thousands of proteins. Pooling patient-derived data from multiple institutio…

stat.AP2024★ 8 cited

Predicting Progression Events in Multiple Myeloma from Routine Blood Work

Maximilian Ferle, Nora Grieb, Markus Kreuz +5

The ability to accurately predict disease progression is paramount for optimizing multiple myeloma patient care. This study introduces a hybrid neural network architecture, combini…

physics.bio-ph2019★ 9 cited

Changing cell mechanics -- a precondition for malignant transformation of oral squamous carcinoma cells

Felix Meinhoevel, Roland Stange, Joerg Schnauss +3

Oral squamous cell carcinomas (OSCC) are the 6th most common cancer and the diagnosis is often belated for a curative treatment. The reliable and early differentiation between heal…

cond-mat.soft2019★ 26 cited

The Role of Stickiness in the Rheology of Semiflexible Polymers

Tom Golde, Martin Glaser, Cary Tutmarc +7

Semiflexible polymers form central structures in biological material. Modeling approaches usually neglect influences of polymer-specific molecular features aiming to describe semif…

cs.DM2017★ 112 cited

Phylogenomics with Paralogs

Marc Hellmuth, Nicolas Wieseke, Marcus Lechner +3

Phylogenomics heavily relies on well-curated sequence data sets that consist, for each gene, exclusively of 1:1-orthologous. Paralogs are treated as a dangerous nuisance that has t…