112 citations · 423 across the 60 of their papers we have counts for
78 papers
Unstable Cores are the source of instability in chemical reaction networks
Nicola Vassena, Peter F. Stadler
In biochemical networks, complex dynamical features such as superlinear growth and oscillations are classically considered a consequence of autocatalysis. For the large class of pa…
Relative Timing Information and Orthology in Evolutionary Scenarios
David Schaller, Tom Hartmann, Manuel Lafond +3
Evolutionary scenarios describing the evolution of a family of genes within a collection of species comprise the mapping of the vertices of a gene tree to vertices and edges of…
Clustering Systems of Phylogenetic Networks
Marc Hellmuth, David Schaller, Peter F. Stadler
Rooted acyclic graphs appear naturally when the phylogenetic relationship of a set of taxa involves not only speciations but also recombination, horizontal transfer, or hybridi…
What makes a reaction network "chemical"?
Stefan Müller, Christoph Flamm, Peter F. Stadler
Reaction networks (RNs) comprise a set of species and a set of reactions , each converting a multiset of educts into a multiset $Y'\subset…
The Past as a Stochastic Process
David H. Wolpert, Michael H. Price, Stefani A. Crabtree +6
Historical processes manifest remarkable diversity. Nevertheless, scholars have long attempted to identify patterns and categorize historical actors and influences with some succes…
Orientation of Fitch Graphs and Detection of Horizontal Gene Transfer in Gene Trees
David Schaller, Marc Hellmuth, Peter F. Stadler
Horizontal gene transfer events partition a gene tree and thus, its leaf set into subsets of genes whose evolutionary history is described by speciation and duplication events…