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math.CO2009★ 1 cited
Target prediction and a statistical sampling algorithm for RNA-RNA interaction
F. W. D. Huang, J. Qin, C. M. Reidys +1
It has been proven that the accessibility of the target sites has a critical influence for miRNA and siRNA. In this paper, we present a program, rip2.0, not only the energetically…
math.CO2009
RNA-RNA interaction prediction: partition function and base pair pairing probabilities
Fenix W. D. Huang, Jing Qin, Christian M. Reidys +1
In this paper, we study the interaction of an antisense RNA and its target mRNA, based on the model introduced by Alkan {\it et al.} (Alkan {\it et al.}, J. Comput. Biol., Vol:267-…