550 citations
- Ludwig-Maximilians-Universität MünchenDE9 papers
- Center for NanoScienceDE6 papers
- Technical University of MunichDE6 papers
- Nanosystems Initiative MunichDE4 papers
- Centre National de la Recherche ScientifiqueFR3 papers
- Aarhus UniversityDK2 papers
- Columbia UniversityUS2 papers
- Delft University of TechnologyNL2 papers
- Hasselt UniversityBE2 papers
- Heinrich Heine University DüsseldorfDE2 papers
- Helmholtz MunichDE2 papers
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q-bio.BM2022★ 6 cited
Molecular dynamics simulations with grand-canonical reweighting suggest cooperativity effects in RNA structure probing experiments
Nicola Calonaci, Mattia Bernetti, Alisha Jones +2
Chemical probing experiments such as SHAPE are routinely used to probe RNA molecules. In this work, we use atomistic molecular dynamics simulations to test the hypothesis that bind…
q-bio.BM2020★ 329 cited
The FRET-based structural dynamics challenge -- community contributions to consistent and open science practices
Eitan Lerner, Benjamin Ambrose, Anders Barth +23
Single-molecule Förster resonance energy transfer (smFRET) has become a mainstream technique for probing biomolecular structural dynamics. The rapid and wide adoption of the techni…
q-bio.BM2020★ 32 cited
Machine learning a model for RNA structure prediction
Nicola Calonaci, Alisha Jones, Francesca Cuturello +2
RNA function crucially depends on its structure. Thermodynamic models currently used for secondary structure prediction rely on computing the partition function of folding ensemble…