output
19942025
most citedIdentification of slow molecular order parameters for Markov model construction

1.1k citations

Showing 2009Show all

11 papers · 1 filter

q-bio.SC2009★ 58 cited

Stochastic simulations of cargo transport by processive molecular motors

Christian B. Korn, Stefan Klumpp, Reinhard Lipowsky +1

We use stochastic computer simulations to study the transport of a spherical cargo particle along a microtubule-like track on a planar substrate by several kinesin-like processive…

physics.bio-ph2009★ 25 cited

Traffic by multiple species of molecular motors

Yan Chai, Stefan Klumpp, Melanie J. I. Muller +1

We study the traffic of two types of molecular motors using the two-species symmetric simple exclusion process (ASEP) with periodic boundary conditions and with attachment and deta…

cond-mat.stat-mech2009★ 1 cited

Adhesion of surfaces via particle adsorption: Exact results for a lattice of fluid columns

Bartosz Rozycki, Reinhard Lipowsky, Thomas R. Weikl

We present here exact results for a one-dimensional gas, or fluid, of hard-sphere particles with attractive boundaries. The particles, which can exchange with a bulk reservoir, med…

cond-mat.soft2009

Fully reversible transition from Wenzel to Cassie-Baxter states on corrugated superhydrophobic surfaces

R. J. Vrancken, H. Kusumaatmaja, K. Hermans +4

Liquid drops on textured surfaces show different dynamical behaviors depending on their wetting states. They are extremely mobile when they are supported by composite solid-liquid-…

cond-mat.soft2009★ 36 cited

Imbibition through an array of triangular posts

M. L. Blow, H. Kusumaatmaja, J. M. Yeomans

We present and interpret simulation results showing how a fluid moves on a hydrophilic substrate patterned by a square array of triangular posts. We demonstrate that the shape of t…

quant-ph2009

Quantum Work Relations under Trial Hamiltonians

Arun Kumar Pati, Mamata Sahoo, Biswajit Pradhan

The universal quantum work relation connects a functional of an arbitrary observable averaged over the forward process to the free energy difference and another functional averaged…

cond-mat.soft2009★ 108 cited

Adhesion of membranes via receptor-ligand complexes: Domain formation, binding cooperativity, and active processes

Thomas R. Weikl, Mesfin Asfaw, Heinrich Krobath +2

Cell membranes interact via anchored receptor and ligand molecules. Central questions on cell adhesion concern the binding affinity of these membrane-anchored molecules, the mechan…

cond-mat.soft2009★ 88 cited

Binding cooperativity of membrane adhesion receptors

Heinrich Krobath, Bartosz Rozycki, Reinhard Lipowsky +1

The adhesion of cells is mediated by receptors and ligands anchored in apposing membranes. A central question is how to characterize the binding affinity of these membrane-anchored…

physics.bio-ph2009★ 19 cited

Transport by molecular motors in the presence of static defects

Yan Chai, Reinhard Lipowsky, Stefan Klumpp

The transport by molecular motors along cytoskeletal filaments is studied theoretically in the presence of static defects. The movements of single motors are described as biased ra…

cond-mat.soft2009★ 35 cited

Anisotropic hysteresis on ratcheted superhydrophobic surfaces

H. Kusumaatmaja, J. M. Yeomans

We consider the equilibrium behaviour and dynamics of liquid drops on a superhydrophobic surface patterned with sawtooth ridges or posts. Due to the anisotropic geometry of the sur…

q-bio.BM2009★ 5 cited

Transition states in protein folding

Thomas R. Weikl

The folding dynamics of small single-domain proteins is a current focus of simulations and experiments. Many of these proteins are 'two-state folders', i.e. proteins that fold rath…