289 citations
Counting papers with at most 25 authors, so collaboration author lists do not stand in for the people here.
- University of LuxembourgLU34 papers
- University of CambridgeGB5 papers
- Centre Hospitalier de LuxembourgLU3 papers
- Institute for Systems BiologyUS3 papers
- Aalto UniversityFI2 papers
- Adobe Systems (United States)US2 papers
- KTH Royal Institute of TechnologySE2 papers
- Trier University of Applied SciencesDE2 papers
- University of Newcastle AustraliaAU2 papers
- AlbaNovaSE1 paper
- Cluster of Excellence on Plant SciencesDE1 paper
- Cornell UniversityUS1 paper
6 papers · 1 filter
ReconMap: An interactive visualisation of human metabolism
Alberto Noronha, Anna Dröfn Danielsdóttir, Freyr Jóhannsson +8
A genome-scale reconstruction of human metabolism, Recon 2, is available but no interface exists to interactively visualise its content integrated with omics data and simulation re…
Identification of conserved moieties in metabolic networks by graph theoretical analysis of atom transition networks
Hulda S. Haraldsdóttir, Ronan M. T. Fleming
Conserved moieties are groups of atoms that remain intact in all reactions of a metabolic network. Identification of conserved moieties gives insight into the structure and functio…
Conditions for duality between fluxes and concentrations in biochemical networks
Ronan M. T. Fleming, Nikos Vlassis, Ines Thiele +1
Mathematical and computational modelling of biochemical networks is often done in terms of either the concentrations of molecular species or the fluxes of biochemical reactions. Wh…
Relative Stability of Network States in Boolean Network Models of Gene Regulation in Development
Joseph Xu Zhou, Areejit Samal, Aymeric Fouquier d'Hèrouël +2
Progress in cell type reprogramming has revived the interest in Waddington's concept of the epigenetic landscape. Recently researchers developed the quasi-potential theory to repre…
Mesoscopic behavior from microscopic Markov dynamics and its application to calcium release channels
Nils Christian, Alexander Skupin, Silvia Morante +3
A major challenge in biology is to understand how molecular processes determine phenotypic features. We address this fundamental problem in a class of model systems by developing a…
Fast Reconstruction of Compact Context-Specific Metabolic Network Models
Nikos Vlassis, Maria Pires Pacheco, Thomas Sauter
Systemic approaches to the study of a biological cell or tissue rely increasingly on the use of context-specific metabolic network models. The reconstruction of such a model from h…