60 citations
Counting papers with at most 25 authors, so collaboration author lists do not stand in for the people here.
4 papers
ntLink: a toolkit for de novo genome assembly scaffolding and mapping using long reads
Lauren Coombe, René L. Warren, Johnathan Wong +2
With the increasing affordability and accessibility of genome sequencing data, de novo genome assembly is an important first step to a wide variety of downstream studies and analys…
GapPredict: A Language Model for Resolving Gaps in Draft Genome Assemblies
Eric Chen, Justin Chu, Jessica Zhang +2
Short-read DNA sequencing instruments can yield over 1e+12 bases per run, typically composed of reads 150 bases long. Despite this high throughput, de novo assembly algorithms have…
Multi-armed Bandit Problem with Known Trend
Djallel Bouneffouf, Raphaël Feraud
We consider a variant of the multi-armed bandit model, which we call multi-armed bandit problem with known trend, where the gambler knows the shape of the reward function of each a…
On the representation of de Bruijn graphs
Rayan Chikhi, Antoine Limasset, Shaun Jackman +2
The de Bruijn graph plays an important role in bioinformatics, especially in the context of de novo assembly. However, the representation of the de Bruijn graph in memory is a comp…