output
20132025
most citedA Contrast-Adaptive Method for Simultaneous Whole-Brain and Lesion Segmentation in Multiple Sclerosis

164 citations

14 papers

physics.med-ph2025★ 2 cited

Millennium Pathways for Tractography: 40 grand challenges to shape the future of tractography

Maxime Descoteaux, Kurt G. Schilling, Dogu Baran Aydogan +44

In the spirit of the historic Millennium Prize Problems that heralded a new era for mathematics, the newly formed International Society for Tractography (IST) has launched the Mill…

eess.IV2024★ 3 cited

Building an AI Support Tool for Real-time Ulcerative Colitis Diagnosis

Bjørn Leth Møller, Bobby Zhao Sheng Lo, Johan Burisch +4

Ulcerative Colitis (UC) is a chronic inflammatory bowel disease decreasing life quality through symptoms such as bloody diarrhoea and abdominal pain. Endoscopy is a cornerstone of…

physics.atom-ph2022★ 14 cited

Precision Measurement of the Excited State Landé g-factor and Diamagnetic Shift of the Cesium D Line

Hans Stærkind, Kasper Jensen, Jörg H. Müller +3

We have performed saturated absorption spectroscopy on the cesium D line in 3 T and 7 T magnetic fields. By means of sideband spectroscopy on the extreme angular momentum sta…

physics.med-ph2020★ 49 cited

Double diffusion encoding and applications for biomedical imaging

Rafael N. Henriques, Marco Palombo, Sune N. Jespersen +3

Diffusion Magnetic Resonance Imaging (dMRI) is one of the most important contemporary non-invasive modalities for probing tissue structure at the microscopic scale. The majority of…

physics.bio-ph2020★ 73 cited

Detection of biological signals from a live mammalian muscle using a diamond quantum sensor

James Luke Webb, Luca Troise, Nikolaj Winther Hansen +12

The ability to perform noninvasive, non-contact measurements of electric signals produced by action potentials is essential in biomedicine. A key method to do this is to remotely s…

eess.IV2020★ 164 cited

A Contrast-Adaptive Method for Simultaneous Whole-Brain and Lesion Segmentation in Multiple Sclerosis

Stefano Cerri, Oula Puonti, Dominik S. Meier +4

Here we present a method for the simultaneous segmentation of white matter lesions and normal-appearing neuroanatomical structures from multi-contrast brain MRI scans of multiple s…

cs.LG2020★ 4 cited

Probabilistic Spatial Transformer Networks

Pola Schwöbel, Frederik Warburg, Martin Jørgensen +2

Spatial Transformer Networks (STNs) estimate image transformations that can improve downstream tasks by `zooming in' on relevant regions in an image. However, STNs are hard to trai…

physics.med-ph2019★ 142 cited

Accessibility of Cortical Regions to Focal TES: Dependence on Spatial Position, Safety, and Practical Constraints

Guilherme Bicalho Saturnino, Hartwig Roman Siebner, Axel Thielscher +1

Transcranial electric stimulation (TES) can modulate intrinsic neural activity in the brain by injecting weak currents through electrodes attached to the scalp. TES has been widely…

cs.CV2018

Learning to quantify emphysema extent: What labels do we need?

Silas Nyboe Ørting, Jens Petersen, Laura H. Thomsen +2

Accurate assessment of pulmonary emphysema is crucial to assess disease severity and subtype, to monitor disease progression and to predict lung cancer risk. However, visual assess…

cs.CV2018

A Modality-Adaptive Method for Segmenting Brain Tumors and Organs-at-Risk in Radiation Therapy Planning

Mikael Agn, Per Munck af Rosenschöld, Oula Puonti +7

In this paper we present a method for simultaneously segmenting brain tumors and an extensive set of organs-at-risk for radiation therapy planning of glioblastomas. The method comb…

cs.CV2018★ 1 cited

Deep Learning from Label Proportions for Emphysema Quantification

Gerda Bortsova, Florian Dubost, Silas Ørting +5

We propose an end-to-end deep learning method that learns to estimate emphysema extent from proportions of the diseased tissue. These proportions were visually estimated by experts…

stat.ML2018★ 1 cited

Probabilistic PARAFAC2

Philip J. H. Jørgensen, Søren F. V. Nielsen, Jesper L. Hinrich +3

The PARAFAC2 is a multimodal factor analysis model suitable for analyzing multi-way data when one of the modes has incomparable observation units, for example because of difference…

cs.CV2018

Feature learning based on visual similarity triplets in medical image analysis: A case study of emphysema in chest CT scans

Silas Nyboe Ørting, Jens Petersen, Veronika Cheplygina +3

Supervised feature learning using convolutional neural networks (CNNs) can provide concise and disease relevant representations of medical images. However, training CNNs requires a…

physics.med-ph2013★ 8 cited

Diffusion imaging with stimulated echoes: signal models and experiment design

Daniel C. Alexander, Tim B. Dyrby

Purpose: Stimulated echo acquisition mode (STEAM) diffusion MRI can be advantageous over pulsed-gradient spin-echo (PGSE) for diffusion times that are long compared to $\ttwo$. It…