150 citations
- University College LondonGB4 papers
- National Cancer InstituteUS3 papers
- National Institutes of HealthUS3 papers
- BioLegend (United States)US2 papers
- ETH ZurichCH2 papers
- Immune Regulation (United Kingdom)GB2 papers
- Indiana University BloomingtonUS2 papers
- Instituto do Câncer do Estado de São PauloBR2 papers
- La Jolla Institute for ImmunologyUS2 papers
- McMaster UniversityCA2 papers
- McMaster University Medical CentreCA2 papers
- MRC Laboratory of Molecular BiologyGB2 papers
7 papers
ViroBench: Benchmarking Nucleotide Foundation Models on Viral Genomics Tasks
Dongxin Ye, Fang Hu, Han Hu +6
Nucleotide sequences constitute the fundamental genetic basis of biological systems, rendering viral genomic analysis critical for biomedical advancement. Despite progress in biolo…
The IBEX Imaging Knowledge-Base: A Community Resource Enabling Adoption and Development of Immunofluoresence Imaging Methods
Ziv Yaniv, Ifeanyichukwu U. Anidi, Leanne Arakkal +59
The iterative bleaching extends multiplexity (IBEX) Knowledge-Base is a central portal for researchers adopting IBEX and related 2D and 3D immunofluorescence imaging methods. The d…
DiffPaSS -- High-performance differentiable pairing of protein sequences using soft scores
Umberto Lupo, Damiano Sgarbossa, Martina Milighetti +1
Identifying interacting partners from two sets of protein sequences has important applications in computational biology. Interacting partners share similarities across species due…
The IBEX Knowledge-Base: Achieving more together with open science
Andrea J. Radtke, Ifeanyichukwu Anidi, Leanne Arakkal +55
Iterative Bleaching Extends multipleXity (IBEX) is a versatile method for highly multiplexed imaging of diverse tissues. Based on open science principles, we created the IBEX Knowl…
The NOSTRA model: coherent estimation of infection sources in the case of possible nosocomial transmission
David J Pascall, Chris Jackson, Stephanie Evans +8
Nosocomial infections have important consequences for patients and hospital staff: they worsen patient outcomes and their management stresses already overburdened health systems. A…
Surfactant amplifies yield-stress effects in the capillary instability of a film coating a tube
James D. Shemilt, Alex Horsley, Oliver E. Jensen +2
To assess how the presence of surfactant in lung airways alters the flow of mucus that leads to plug formation and airway closure, we investigate the effect of insoluble surfactant…