output
20182025
most citedBest Practices for Alchemical Free Energy Calculations

289 citations

29 papers

physics.chem-ph2025

SEAMM: A Simulation Environment for Atomistic and Molecular Modeling

Paul Saxe, Jessica Nash, Mohammad Mostafanejad +4

The Simulation Environment for Atomistic and Molecular Modeling (SEAMM) is an open-source software package written in Python that provides a graphical interface for setting up, exe…

physics.chem-ph2025★ 4 cited

The Enduring Relevance of Semiempirical Quantum Mechanics

Jonathan E. Moussa

The development of semiempirical models to simplify quantum mechanical descriptions of atomistic systems is a practice that started soon after the discovery of quantum mechanics an…

q-bio.BM2024★ 65 cited

The need to implement FAIR principles in biomolecular simulations

Rommie Amaro, Johan Åqvist, Ivet Bahar +125

This letter illustrates the opinion of the molecular dynamics (MD) community on the need to adopt a new FAIR paradigm for the use of molecular simulations. It highlights the necess…

physics.comp-ph2023★ 24 cited

Reproducibility of density functional approximations: how new functionals should be reported

Susi Lehtola, Miguel A. L. Marques

Density functional theory is the workhorse of chemistry and materials science, and novel density functional approximations (DFAs) are published every year. To become available in p…

physics.chem-ph2023★ 16 cited

Revisiting Gauge-Independent Kinetic Energy Densities in Meta-GGAs and Local Hybrid Calculations of Magnetizabilities

Caspar J. Schattenberg, Artur Wodyński, Hugo Åström +3

In a recent study [J. Chem. Theory Comput. 2021, 17, 1457-1468], some of us examined the accuracy of magnetizabilities calculated with density functionals representing the local de…

physics.comp-ph2023★ 22 cited

Automatic Generation of Accurate and Cost-efficient Auxiliary Basis Sets

Susi Lehtola

We have recently discussed an algorithm to automatically generate auxiliary basis sets (ABSs) of the standard form for density fitting (DF) or resolution-of-the-identity (RI) calcu…