130 citations · 161 across the 11 of their papers we have counts for
12 papers
Mutual Information Rate -- Linear Noise Approximation and Exact Computation
Manuel Reinhardt, Age J. Tjalma, Anne-Lena Moor +2
Efficient information processing is crucial for both living organisms and engineered systems. The mutual information rate, a core concept of information theory, quantifies the amou…
Intuitive dissection of the Gaussian information bottleneck method with an application to optimal prediction
Vahe Galstyan, Age Tjalma, Pieter Rein ten Wolde
Efficient signal representation is essential for the functioning of living and artificial systems operating under resource constraints. A widely recognized framework for deriving s…
Bit reset protocols that obey activity-constrained speed limits do not minimize work for a given speed
Daan Mulder, Thomas E. Ouldridge, Pieter Rein ten Wolde
The goal of thermodynamic optimal control theory is to find protocols to change the state of a system from an initial to a desired final distribution, within a finite time, with th…
Diffusible crosslinkers cause superexponential friction forces
Harmen Wierenga, Pieter Rein ten Wolde
The mitotic spindle lies at the heart of the spatio-temporal control over cellular components during cell division. The spindle consists of microtubules, which are not only crossli…
The power of being explicit: demystifying work, heat, and free energy in the physics of computation
Thomas E Ouldridge, Rory A. Brittain, Pieter Rein ten Wolde
Interest in the thermodynamics of computation has revived in recent years, driven by developments in science, economics and technology. Given the consequences of the growing demand…
Spatial-Stochastic Simulation of Reaction-Diffusion Systems
Thomas R. Sokolowski, Pieter Rein ten Wolde
Biochemical networks play a crucial role in biological systems, implementing a broad range of vital functions. They normally operate at low copy numbers and in spatial settings, bu…