130 citations · 137 across the 6 of their papers we have counts for
4 papers · 1 filter
Enzyme localization can drastically affect signal amplification in signal transduction pathways
Siebe B. van Albada, Pieter Rein ten Wolde
Push-pull networks are ubiquitous in signal transduction pathways in both prokaryotic and eukaryotic cells. They allow cells to strongly amplify signals via the mechanism of zero-o…
An allosteric model for circadian KaiC phosphorylation - Supporting Information
Jeroen S. van Zon, David K. Lubensky, Pim R. H. Altena +1
In this Supporting Information, we provide background information on our model of the in vitro Kai system and the calculations that we have performed. We will closely follow the ou…
Green's Function Reaction Dynamics: a new approach to simulate biochemical networks at the particle level and in time and space
Jeroen S. van Zon, Pieter Rein ten Wolde
Biochemical networks are the analog computers of life. They allow living cells to control a large number of biological processes, such as gene expression and cell signalling. In bi…
Statistical analysis of the spatial distribution of operons in the transcriptional regulation network of Escherichia coli
P. B. Warren, P. R. ten Wolde
We have performed a statistical analysis of the spatial distribution of operons in the transcriptional regulation network of Escherichia coli. The analysis reveals that operons tha…