57 citations · 110 across the 40 of their papers we have counts for
47 papers
Encoding level-3 semi-directed phylogenetic networks by quarnets and quinnets
Niels Holtgrefe, Katharina T. Huber, Leo van Iersel +1
Phylogenetic networks generalize phylogenetic trees as models of evolutionary history, allowing lineages to merge as well as to diverge. For many types of genetic data the root pos…
On Tree-Network Distinguishability and Full Identifiability of Phylogenetic Networks
Jari Brits, Niels Holtgrefe, Leo van Iersel +1
Phylogenetic networks generalize phylogenetic trees to evolutionary histories that include reticulate events such as recombination, horizontal gene transfer, and hybridization. Und…
Metropolis-Hastings Sampling of Phylogenetic Networks: Correcting for Symmetries
Leo van Iersel, Remie Janssen, Mark Jones +2
In phylogenetics, Metropolis-Hastings methods are commonly used to sample phylogenetic trees or networks, for example from Bayesian posteriors. These methods generally use transiti…
Proximity Measures for Classes of Phylogenetic Networks
Leo van Iersel, Mark Jones, Esther Julien +2
Phylogenetic networks are used to represent the evolutionary history of species. Due to biological interpretations and computational advantages, researchers have focused on restric…
Tree Containment Parameterized by Scanwidth
Leo van Iersel, Mark Jones, Mathias Weller
TREE CONTAINMENT is a central decision problem in mathematical phylogenetics, asking whether a given rooted phylogenetic tree is embeddable in ("displayed by") a given rooted phylo…
Average-Tree Phylogenetic Diversity Parameterized by Scanwidth and Invisibility
Leo van Iersel, Mark Jones, Jannik Schestag +2
We investigate parameterized algorithms for computing the average-tree phylogenetic diversity (APD) in rooted phylogenetic networks, studying the problem under different structural…