activity
19942024
most citedStructural, mechanical and thermodynamic properties of a coarse-grained DNA model

498 citations · 7.6k across the 97 of their papers we have counts for

collaborators

98 papers

math.DS2024

Exploring simplicity bias in 1D dynamical systems

Kamaludin Dingle, Mohammad Alaskandarani, Boumediene Hamzi +1

Arguments inspired by algorithmic information theory predict an inverse relation between the probability and complexity of output patterns in a wide range of input-output maps. Thi…

cond-mat.soft2023★ 25 cited

Coarse-grained modelling of DNA-RNA hybrids

Eryk J. Ratajczyk, Petr Šulc, Andrew J. Turberfield +2

We introduce oxNA, a new model for the simulation of DNA-RNA hybrids which is based on two previously developed coarse-grained models$\unicode{x2014}$oxDNA and oxRNA. The model nat…

cs.LG2023★ 14 cited

Deep neural networks have an inbuilt Occam's razor

Chris Mingard, Henry Rees, Guillermo Valle-Pérez +1

The remarkable performance of overparameterized deep neural networks (DNNs) must arise from an interplay between network architecture, training algorithms, and structure in the dat…

cond-mat.soft2022★ 41 cited

Designing the self-assembly of arbitrary shapes using minimal complexity building blocks

Joakim Bohlin, Andrew J. Turberfield, Ard A. Louis +1

The design space for a self-assembled multicomponent objects ranges from a solution in which every building block is unique to one with the minimum number of distinct building bloc…

cond-mat.soft2021★ 3 cited

Free-energy landscapes of DNA and its assemblies: Perspectives from coarse-grained modelling

Jonathan P. K. Doye, Ard A. Louis, John S. Schreck +5

This chapter will provide an overview of how characterizing free-energy landscapes can provide insights into the biophysical properties of DNA, as well as into the behaviour of the…

cs.LG2021★ 3 cited

Why flatness does and does not correlate with generalization for deep neural networks

Shuofeng Zhang, Isaac Reid, Guillermo Valle Pérez +1

The intuition that local flatness of the loss landscape is correlated with better generalization for deep neural networks (DNNs) has been explored for decades, spawning many differ…